Sequence
atgc intronic sequence ATGC exonic sequencegtatggaaatacacctgaaacataattctattataatttgggtgttgatagaaaaaggattaattagaggcagttgtgtaatgtggcagGCACAATCACGCAGCTGTTTGGAGCAGGCGAGAGCGAATGTTCTGTCATCATGCTGTGGACATATGCCTTGGCGTCAGTTGCCCTCACGCTTTGGTCCAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0044g01880.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA01G36030.1 (Glycine max), 3'ss of exon 10
gtatggaaatacacctgaaacataattctattataatttg--ggtgttgataga-aaaaggattaattagaggcagttgtgta-------atgtg------gcagGCACAATCACGCAGCTGTTTGGAGCAGGCGAGAGCGAATGTTCTGTCATCATGCTGTGGACATATGCCTTGGCGTCAGTTGCCCTCACGCTTTGGTCCAC
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----gtatctactgttttctttttcacct-ttgcaatttgttagtagtagtagataataaacttattttgatataactatatattcaaacattcgctttctgcagGCACAATCGCGCAATTGTTTGGAGCTGGTGAAGGTGAATGTTCTGTTATCATGCTATGGACATATGCTTTGGCCTCAGTTGCAGTCACTTTTTGGACAAC
upper sequence: Vv04s0044g01880.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA11G09390.1 (Glycine max), 3'ss of exon 10
-gtatggaaatacacctgaaacataattctattataatttgggtgttgatagaaaaaggattaattagaggcagttgtgtaatg-----------tggcagGCACAATCACGCAGCTGTTTGGAGCAGGCGAGAGCGAATGTTCTGTCATCATGCTGTGGACATATGCCTTGGCGTCAGTTGCCCTCACGCTTTGGTCCAC
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ggggagcgaata-atttcttctgtatctactgtttttcatgcaccttaataataaagttatttgatatatataactgcatattcaaacttccctctgtcagGCACCATCGCGCAGTTGTTTGGAGCTGGTGAAGGTGAATGTTCTGTTATCATGCTATGGACATATGTTTTGGCCTCAGTTGCAGTCACTTTTTGGACAAC
upper sequence: Vv04s0044g01880.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA16G21930.1 (Glycine max), 3'ss of exon 9
gtatggaaatacacctgaaacataattctattataatttgggtgttgatagaaaaaggattaat--tagaggcagttgtgt---------aatgtggcagGCACAATCACGCAGCTGTTTGGAGCAGGCGAGAGCGAATGTTCTGTCATCATGCTGTGGACATATGCCTTGGCGTCAGTTGCCCTCACGCTTTGGTCCAC
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gggaaccacttttcttttgtttcaactgttttcacattagaaattcgttagtcttggtattcataataaacccaattttgttctcactttaatttttcagGCACCATTGCTCAATTGTTCGGAGCTGGCGAAAGTGAATGTTCTGTGATCATGCTTTGGACATATATTTTGGCGGCAGTAGCAGTTACCCTTTGGTCAACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|111283806|gb|EE296907.1|EE296907EST: TCAGTTTGTCCTTCTATTACAATATGCACTTCCGCCAGCCATGAACATAG GCACAATCACGCAGCTGTTTGGAGCAGGCGAGAGCGAATGTTCTGTCATCA
genomic: TCAGTTTGTCCTTCTATTACAATATGCACTTCCGCCAGCCATGAACATAGgtatggaaat ... aatgtggcagGCACAATCACGCAGCTGTTTGGAGCAGGCGAGAGCGAATGTTCTGTCATCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatttgggtgttgatagaaaaaggattaattagaggcagttgtgtaatgtggcagGCACAATCACGCAGCTGTTTGGAGCAGGCGAGAGCGAATGTTCTGTCATCATGCTGTGGACATATGCCTTGGCGTCAGTTGCCCTCACGCTTTGGTCCAC
gattaat putative branch site (score: 3)
aaaaaggattaatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatggaaatacacctgaaacataattctattataatttgggtgttgatagaaaaaggattaattagaggcagttgtgtaatgtggcagGCACAATCACGCAGCTGTTTGGAGCAGGCGAGAGCGAATGTTCTGTCATCATGCTGTGGACATATGCCTTGGCGTCAGTTGCCCTCACGCTTTGGTCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG