1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gccatcattcaaccttgatatcttttatgtttgttgactggtggctttacatatgcgtatcagctgaagtgtttcttttcttattctttggcaaactcagGTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG
species | Vitis vinifera |
transcript | Vv04s0044g01840.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAG GTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCAEST: gi|56409766|gb|CX018018.1|CX018018
genomic: AAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAGgtatggtact ... gcaaactcagGTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCA
EST: AAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAG GTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCAEST: gi|110703600|gb|EE080590.1|EE080590
genomic: AAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAGgtatggtact ... gcaaactcagGTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCA
EST: AAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAG GTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCAEST: gi|351041413|gb|FQ447540.1|FQ447540
genomic: AAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAGgtatggtact ... gcaaactcagGTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCA
EST: AAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAG GTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCAEST: gi|110374828|gb|EC939763.1|EC939763
genomic: AAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAGgtatggtact ... gcaaactcagGTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCA
EST: AAGATTGTTTTGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAG GTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCAEST: gi|110691152|gb|EE068926.1|EE068926
genomic: AAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAGgtatggtact ... gcaaactcagGTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCA
EST: AAGATTGTTTTGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAG GTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCAEST: gi|110711713|gb|EE088506.1|EE088506
genomic: AAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAGgtatggtact ... gcaaactcagGTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCA
EST: AAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAG GTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCAEST: gi|34363693|gb|CF405278.1|CF405278
genomic: AAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAGgtatggtact ... gcaaactcagGTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCA
EST: AAGATTGTTTTGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAG GTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCAEST: gi|56409464|gb|CX017716.1|CX017716
genomic: AAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAGgtatggtact ... gcaaactcagGTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCA
EST: AAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAG GTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCAEST: gi|56409535|gb|CX017787.1|CX017787
genomic: AAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAGgtatggtact ... gcaaactcagGTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCA
EST: AAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAG GTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCAEST: gi|46911394|gb|CN546769.1|CN546769
genomic: AAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAGgtatggtact ... gcaaactcagGTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCA
EST: AAGATTGTTTTGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAG GTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCAEST: gi|352794399|gb|FQ481630.1|FQ481630
genomic: AAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAGgtatggtact ... gcaaactcagGTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCA
EST: AAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAG GTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCAEST: gi|30302776|gb|CB979570.1|CB979570
genomic: AAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAGgtatggtact ... gcaaactcagGTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCA
EST: AAGATTGTTTTGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAG GTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCAEST: gi|71880737|gb|DT029792.1|DT029792
genomic: AAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAGgtatggtact ... gcaaactcagGTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCA
EST: AAGATTGTTTTGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAG GTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACC
genomic: AAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAGgtatggtact ... gcaaactcagGTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACC
tttacatatgcgtatcagctgaagtgtttcttttcttattctttggcaaactcagGTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG
tttcttttcttattct CT-rich tract
tttcttttcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccatcattcaaccttgatatcttttatgtttgttgactggtggctttacatatgcgtatcagctgaagtgtttcttttcttattctttggcaaactcagGTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
gccatca
- - - -ttcaacc
- - - - - - - - - - - - - - - - - tgactgg
- - - - - - - - - - - - - - - - - - - - -tggcttt
- - - - - - - - - - - - - - - - - - - - - - - - -catatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagctga