Sequence
atgc intronic sequence ATGC exonic sequencegtaatacttttggctatttgattgttcatcattcaacattttgttttaaatttggttcatgtttttgctatgtttctaagatcattatcctttttgtctaattggttagGTGGATTCCGATAACTTGGATGAGTACGTATCATTGGTAGTTGATGCAACTGTCAAGTCAGGGCTAATGCATCAAATGGAAGCATTTAGAGCAGGGTTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA11G11490.2 (Glycine max), 3'ss of exon 11
gtaatacttttggctatttgattgttcatcattcaacattttgttttaaatttggttcatgtttttgctatgtttctaagatcattatcctttttgtctaattggttagGTGGATTCCGATAACTTGGATGAGTACGTATCATTGGTAGTTGATGCAACTGTCAAGTCAGGGCTAATGCATCAAATGGAAGCATTTAGAGCAGGGTTTA
||| | | || | | | | ||||| |||||||| || | || | | || | || ||| |||| || | |||| || | |||| | || |||||| |||| |||| ||||| |||||||| ||| | || | |||| ||||||||||||||||||||||||||| |
-------------gtatgtattcagtctgtttctattacctggtttttgttttggttctgattctgtctgttatgaaaattgctttgaacttactgtcaaactt-ccagGTTGACATCAATAATCTAGAGGAGTACATATCCATGGTGGTTGAGGCAACTGTTAAGACTGGAATCATGCGTCAAATGGAAGCATTTAGAGCAGGGTTCA
upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA12G03640.1 (Glycine max), 3'ss of exon 11
gtaatacttttggctatttgattgttcatcattcaacattttgttttaaatttggttcatgtttttgctatgtttctaagatcattatcctttttgtctaattggttagGTGGATTCCGATAACTTGGATGAGTACGTATCATTGGTAGTTGATGCAACTGTCAAGTCAGGGCTAATGCATCAAATGGAAGCATTTAGAGCAGGGTTTA
||| | | || || | | ||||| |||||||| || | || | | || | || ||| |||| || | | |||| || | |||| | || |||||| |||| |||| ||||| ||||| || ||| | || | |||| |||||||||||| ||||||||||||||||
-------------gtatgtattcagtctgttttttttacctggtttttgttttggttctgattctgtctgtaataaaaattgctttgaacttactgtcaaactt-tcagGTTGACATCAATAATCTAGAGGAGTACATATCCATGGTGGTTGAGGCAACGGTTAAGACTGGAATCATGCGTCAAATGGAAGCTTTTAGAGCAGGGTTTA
upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA06G00600.2 (Glycine max), 3'ss of exon 11
gtaatacttttggctatttgattgttcatcattcaacattttgttttaaatttggttcatgtttttgctatgtttctaagatcattatcctttttgtct-aattggttagGTGGATTCCGATAACTTGGATGAGTACGTATCATTGGTAGTTGATGCAACTGTCAAGTCAGGGCTAATGCATCAAATGGAAGCATTTAGAGCAGGGTTTA
|| || ||| | | | ||| | | || || | | |||| | | || | || ||| || | | |||| ||| | | || ||||| ||||| |||| ||||| | ||||||||||||||| | || | |||| ||||| ||||||||||||||||||||||
-----------------------gtatggagttaaac-tctgagctagtctttagatattggttct--tgtgttacagaaatttcctttaacttactctcaaattctcagGTTGATATCAACAATTTGGAGGAGTATATATCCTTGGTGGCAGATGCAACTGTCAAGACTGGAATCATGCGGCAAATAGAAGCATTTAGAGCAGGGTTTA
upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA04G00530.1 (Glycine max), 3'ss of exon 11
gtaatacttttggctatttgattgttcatcattcaacattttgttttaaatttggttcatgtttttgctatgtttctaagatcattatcctttttgtctaattggttagGTGGATTCCGATAACTTGGATGAGTACGTATCATTGGTAGTTGATGCAACTGTCAAGTCAGGGCTAATGCATCAAATGGAAGCATTTAGAGCAGGGTTTA
|| || ||| | | | | | | || || || | || | | || || || ||| | || |||| | |||| ||| | | || ||||| ||||| |||| ||||| | ||||||||||||||| | || | |||| ||||| ||||||||||||||||||||||
-----------------------gtatggagttaaaccctgagcta-gtctatagatcttggttcttctgttatgaaaatttcctttaacttactctcaaattc-tcagGTTGATATCAACAATTTGGAGGAGTATATATCCTTGGTGATCGATGCAACTGTCAAGACTGGAATCATGCGGCAAATAGAAGCATTTAGAGCAGGGTTTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110702937|gb|EE079346.1|EE079346EST: TTCCTGGCTATCCGGATTACATTCTGAAATCAGGCTATGAAAATGTCCTT GTGGATTCCGATAACTTGGATGAGTACGTATCATTGGTAGTTGATGCAACT
genomic: TTCCTGGCTATCCGGATTACATTCTGAAATCAGGCTATGAAAATGTCCTTgtaatacttt ... aattggttagGTGGATTCCGATAACTTGGATGAGTACGTATCATTGGTAGTTGATGCAACT
EST:
gi|161717510|gb|FC067870.1|FC067870EST: TTCCTGGCTATCCAGATTACATTCTGAAATCAGGCTATGAAAATGTCCTT GTGTATTCTGATAACTTGGATGAGTACATATCATTGGTAGTTGATGCAACT
genomic: TTCCTGGCTATCCGGATTACATTCTGAAATCAGGCTATGAAAATGTCCTTgtaatacttt ... aattggttagGTGGATTCCGATAACTTGGATGAGTACGTATCATTGGTAGTTGATGCAACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttcatgtttttgctatgtttctaagatcattatcctttttgtctaattggttagGTGGATTCCGATAACTTGGATGAGTACGTATCATTGGTAGTTGATGCAACTGTCAAGTCAGGGCTAATGCATCAAATGGAAGCATTTAGAGCAGGGTTTA
gtctaat putative branch site (score: 3)
atcattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatacttttggctatttgattgttcatcattcaacattttgttttaaatttggttcatgtttttgctatgtttctaagatcattatcctttttgtctaattggttagGTGGATTCCGATAACTTGGATGAGTACGTATCATTGGTAGTTGATGCAACTGTCAAGTCAGGGCTAATGCATCAAATGGAAGCATTTAGAGCAGGGTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG