1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gtatctttttatctccatctagatggtagctagaaaattggtgaaaatttatctacttcatggttaaacaatgcaatggaaattcttcccttttctgtagGTGGTTGGTGGAAATGGTGCTGAACAAACTGTTGTAAGTGGATCCATGGAAGTGCTGCGACCCTGTTGGGCTGTTGCAACCTCTGGTGTACCAGTGCGAG
species | Vitis vinifera |
transcript | Vv04s0023g02750.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTGGTCTCCATGCTGATATTAACGGAGATGGGGTTCTAGATCATGTCCAG GTGGTTGGTGGAAATGGTGCTGAACAAACTGTTGTAAGTGGATCCATGGAAEST: gi|33403432|gb|CF209059.1|CF209059
genomic: GTGGTCTCCATGCTGATATTAACGGAGATGGGGTTCTAGATCATGTCCAGgtgcactttt ... ttttctgtagGTGGTTGGTGGAAATGGTGCTGAACAAACTGTTGTAAGTGGATCCATGGAA
EST: GTGGTCTCCATGCTGATATTAACGGAGATGGGGTTCTAGATCATGTCCAG GTGGTTGGTGGAAATGGTGCTGAACAAACTGTTGTAAGTGGATCCATGGAA
genomic: GTGGTCTCCATGCTGATATTAACGGAGATGGGGTTCTAGATCATGTCCAGgtgcactttt ... ttttctgtagGTGGTTGGTGGAAATGGTGCTGAACAAACTGTTGTAAGTGGATCCATGGAA
aatttatctacttcatggttaaacaatgcaatggaaattcttcccttttctgtagGTGGTTGGTGGAAATGGTGCTGAACAAACTGTTGTAAGTGGATCCATGGAAGTGCTGCGACCCTGTTGGGCTGTTGCAACCTCTGGTGTACCAGTGCGAG
ttcttcccttttctgt CT-rich tract
ttaaacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctttttatctccatctagatggtagctagaaaattggtgaaaatttatctacttcatggttaaacaatgcaatggaaattcttcccttttctgtagGTGGTTGGTGGAAATGGTGCTGAACAAACTGTTGTAAGTGGATCCATGGAAGTGCTGCGACCCTGTTGGGCTGTTGCAACCTCTGGTGTACCAGTGCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - ctccatc
- - - - - - - - - -tagatgg
- - - - - - - - - - - - - - - -agaaaat
- - - - - - - - - - - - - - - - gaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatggaa