1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaacctctttctctagatgcctctcaccaaatctactgcttatatctgtatctgacttgcttttaattacgtgatggaatacagGGGTTTACAGTCGAGCTCAAACAAGTGTGGTTTACAGCCGCTGCATCAAGTATGTACCCTTGGAGTCGTGTTTTACATTTTGATCCAGACCATTTTGTGT
species | Vitis vinifera |
transcript | Vv04s0023g01580.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACTGAAGTCCTGGTTTTCAATATCTTTGACTCGCTGTTTTGTGCTAAAAA GGGTTTACAGTCGAGCTCAAACAAGTGTGGTTTACAGCCGCTGCATCAAGTEST: gi|352773669|gb|FQ472451.1|FQ472451
genomic: ACTGAAGTCCTGGTTTTCAATATCTTTGACTCGCTGTTTTGTGCTAAAAAgtaacctctt ... tggaatacagGGGTTTACAGTCGAGCTCAAACAAGTGTGGTTTACAGCCGCTGCATCAAGT
EST: ACTGAAGTCCTGGTTTTCAATATCTTTGACTCGCTGTTTTGTGCTAAAAA GGGTTTACAGTCGAGCTCAAACAAGTGTGGTTTACAGCCGCTGCATCAAGTEST: gi|110697605|gb|EE074738.1|EE074738
genomic: ACTGAAGTCCTGGTTTTCAATATCTTTGACTCGCTGTTTTGTGCTAAAAAgtaacctctt ... tggaatacagGGGTTTACAGTCGAGCTCAAACAAGTGTGGTTTACAGCCGCTGCATCAAGT
EST: ACTGAAGTCCTGGTTTTCAATATCTTTGACTCGCTGTTTTGTGCTAAAAA GGGTTTACAGTCGAGCTCAAACAAGTGTGGTTTACAGCCGCTGCATCAAGTEST: gi|110386533|gb|EC951133.1|EC951133
genomic: ACTGAAGTCCTGGTTTTCAATATCTTTGACTCGCTGTTTTGTGCTAAAAAgtaacctctt ... tggaatacagGGGTTTACAGTCGAGCTCAAACAAGTGTGGTTTACAGCCGCTGCATCAAGT
EST: ACTGAAGTCCTGGTTTTCAATATCTTTGACTCGCTGTTTTGTGCTAAAAA GGGTTTACAGTCGAGCTCAAACAAGTGTGGTTTACAGCCGCTGCATCAAGTEST: gi|110381237|gb|EC946559.1|EC946559
genomic: ACTGAAGTCCTGGTTTTCAATATCTTTGACTCGCTGTTTTGTGCTAAAAAgtaacctctt ... tggaatacagGGGTTTACAGTCGAGCTCAAACAAGTGTGGTTTACAGCCGCTGCATCAAGT
EST: ACTGAAGTCCTGGTTTTCAATATCTTTGACTCGCTGTTTTGTGCTAAAAA GGGTTTACAGTCGAGCTCAAACAAGTGTGGTTTACAGCCGCTGCATCAAGT
genomic: ACTGAAGTCCTGGTTTTCAATATCTTTGACTCGCTGTTTTGTGCTAAAAAgtaacctctt ... tggaatacagGGGTTTACAGTCGAGCTCAAACAAGTGTGGTTTACAGCCGCTGCATCAAGT
aatctactgcttatatctgtatctgacttgcttttaattacgtgatggaatacagGGGTTTACAGTCGAGCTCAAACAAGTGTGGTTTACAGCCGCTGCATCAAGTATGTACCCTTGGAGTCGTGTTTTACATTTTGATCCAGACCATTTTGTGT
ttttaat putative branch site (score: 3)
ttttaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacctctttctctagatgcctctcaccaaatctactgcttatatctgtatctgacttgcttttaattacgtgatggaatacagGGGTTTACAGTCGAGCTCAAACAAGTGTGGTTTACAGCCGCTGCATCAAGTATGTACCCTTGGAGTCGTGTTTTACATTTTGATCCAGACCATTTTGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG