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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttttatatgcactgtgacacctttttatattatcttataactattcaacgaaattttcccaatttttacatggtaaatacccttccaccacacccccctcccccttccccctccttttctttctctctctttattttaatagcaagttgggcttttgtactttttaatgcagCCTCTCATGGATAATCTAGAGGCACAAACATATGAGACATTTGAGAAAGATACAATGAAATACATTCAG

Basic information

species Vitis vinifera
transcript Vv04s0008g03120.t01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161719348|gb|FC068968.1|FC068968
EST:     CTTGGTTATAGGGATTTCTTGCAGTCTCCATTGCAG                         CCTCTCATGGATAATCTAGAGGCACAAACATATGAGACATTTGAGAAAGAT
genomic: CTTGGTTATAGGGATTTCTTGCAGTCTCCATTGCAGgtaactttta ... tttaatgcagCCTCTCATGGATAATCTAGAGGCACAAACATATGAGACATTTGAGAAAGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttctctctctttattttaatagcaagttgggcttttgtactttttaatgcagCCTCTCATGGATAATCTAGAGGCACAAACATATGAGACATTTGAGAAAGATACAATGAAATACATTCAG
                                            ttttaat  putative branch site (score: 3)
                                  cttttgtacttttt  CT-rich tract
        tctctttattttaata  TA-rich tract