1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaatactcttaaaacattaggacgattctatgctcttgcttttgcaaacttttcatttcatcatttcatcccaataagataagaggcacagtgtgttcttttatcaaaatatgagatcattgattgtatcagtaataataaagttttgcggttgaactgcagCCTGAGTGGATGGCACCAGAAGTTCTAAGGAATGAGCCATCGAATGAAAA
species | Vitis vinifera |
transcript | Vv04s0008g01310.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CACGTCTGAAGCACCATACGTTTCTGTCTTCAAAGTCTACTGCAGGAACG CCTGAGTGGATGGCACCAGA-GTTCTAGGGA-TGAGCCATCGAATGAAAAGEST: gi|110397588|gb|EC963341.1|EC963341
genomic: CACGTCTGAAGCACCATACGTTTCTGTCTTCAAAGTCTACTGCAGGAACGgtaatactct ... tgaactgcagCCTGAGTGGATGGCACCAGAAGTTCTAAGGAATGAGCCATCGAATGAAAAG
EST: CACGTCTGAAGCACCATACGTTTCTGTCTTCAAAGTCTACTGCAGGAACG CCTGAGTGGATGGCACCAGAAGTTCTAAGGAATGAGCCATCGAATGAAAAEST: gi|34364117|gb|CF405702.1|CF405702
genomic: CACGTCTGAAGCACCATACGTTTCTGTCTTCAAAGTCTACTGCAGGAACGgtaatactct ... tgaactgcagCCTGAGTGGATGGCACCAGAAGTTCTAAGGAATGAGCCATCGAATGAAAA
EST: CACGTCTGAAGCACCATACGTTTCTGTCTTCAAAGTCTACTGCAGGAACG CCTGAGTGGATGGCACCAGAAGTTCTAAGGAATGAGCCATCGAATGAAAAEST: gi|33402249|gb|CF207876.1|CF207876
genomic: CACGTCTGAAGCACCATACGTTTCTGTCTTCAAAGTCTACTGCAGGAACGgtaatactct ... tgaactgcagCCTGAGTGGATGGCACCAGAAGTTCTAAGGAATGAGCCATCGAATGAAAA
EST: CACGTCTGAAGCACCATACGTTTCTGTCTTCAAAGTCTACTGCAGGAACG CCTGAGTGGATGGCACCAGAAGTTCTAAGGAATGAGCCATCGAATGAAAA
genomic: CACGTCTGAAGCACCATACGTTTCTGTCTTCAAAGTCTACTGCAGGAACGgtaatactct ... tgaactgcagCCTGAGTGGATGGCACCAGAAGTTCTAAGGAATGAGCCATCGAATGAAAA
aatatgagatcattgattgtatcagtaataataaagttttgcggttgaactgcagCCTGAGTGGATGGCACCAGAAGTTCTAAGGAATGAGCCATCGAATGAAAA
cattgat putative branch site (score: 4)
tatcagtaataataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatactcttaaaacattaggacgattctatgctcttgcttttgcaaacttttcatttcatcatttcatcccaataagataagaggcacagtgtgttcttttatcaaaatatgagatcattgattgtatcagtaataataaagttttgcggttgaactgcagCCTGAGTGGATGGCACCAGAAGTTCTAAGGAATGAGCCATCGAATGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA