1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...atagcaacacagatgagggggccttcattataaacataccctttgtgatgtggtatccattccattttggagtggttaacagccttatccaatatgacagGAATTTGGACAGCATTGCCAACATTGCGGGCAGAAGAAACTTGGATTCAATATGTGGTGGTTCAACATTCTGGTGTTGTTGCCTTTCTGGTTATGGACAT
species | Vitis vinifera |
transcript | Vv03s0088g01260.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGCCTGGGAGCTTTGTCCACATTCATTGGTGCTATTGTTGCAGTTCAAA GAATTTGGACAGCATTGCCAACATTGCGGGCAGAAGAAACTTGGATTCAATEST: gi|110390724|gb|EC955650.1|EC955650
genomic: CTGCCTGGGAGCTTTGTCCACATTCATTGGTGCTATTGTTGCAGTTCAAAgtatgtgggt ... aatatgacagGAATTTGGACAGCATTGCCAACATTGCGGGCAGAAGAAACTTGGATTCAAT
EST: TGCCTGGGAGC-TTGTCCCACATTCATTGGTGCTATTGTTGCAGTTCAAA GAATTTGGACAGCATTGCCAACATTGCGGGCAGAAGAAACTTGGATTCAAT
genomic: TGCCTGGGAGCTTTGT-CCACATTCATTGGTGCTATTGTTGCAGTTCAAAgtatgtgggt ... aatatgacagGAATTTGGACAGCATTGCCAACATTGCGGGCAGAAGAAACTTGGATTCAAT
tgatgtggtatccattccattttggagtggttaacagccttatccaatatgacagGAATTTGGACAGCATTGCCAACATTGCGGGCAGAAGAAACTTGGATTCAATATGTGGTGGTTCAACATTCTGGTGTTGTTGCCTTTCTGGTTATGGACAT
ggttaac putative branch site (score: 3)
aatatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagcaacacagatgagggggccttcattataaacataccctttgtgatgtggtatccattccattttggagtggttaacagccttatccaatatgacagGAATTTGGACAGCATTGCCAACATTGCGGGCAGAAGAAACTTGGATTCAATATGTGGTGGTTCAACATTCTGGTGTTGTTGCCTTTCTGGTTATGGACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - caacaca
- - - - - - - - - - gccttca
- - - - - - - - - - - - - - - - - cataccc
- - - - - - - - - - - - - - - - - - - - - - -tgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - gtatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagcctt