Sequence
atgc intronic sequence ATGC exonic sequence...aaaaccatgattacttcaatttgttgttatcacatattcctttttgcataatacattctatttgcctcacttctaattttattatttaactgtcatatagGGATTGAGAGTGAGAAGTCAACTATGTTGTCTGAGACGAAATTGGAGAAGAAGTTTGGGCAGTCTCCTGTGTTTGTTGCATCAACTCTTCTTGAGGATGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g04250.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: LOC_Os07g14850.1 (Oryza sativa), 3'ss of exon 10
aaaaccatgattacttcaatttgttgttatcacatattcctttttgcataatacattctatttgcctcacttctaattttattatttaactgtcatatagGGATTGAGAGTGAGAAGTCAACTATGTTGTCTGAGACGAAATTGGAGAAGAAGTTTGGGCAGTCTCCTGTGTTTGTTGCATCAACTCTTCTTGAGGATGG
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----gtattgtcagcttgtctaacaattgtcaaataaca----taaggtaacataagaaaaacatcacagtaa-aactcaaatgttt--ctttactgcagGAGCTGAGACAGACAAAGCTGGAATTGTGAATCAACAGAAGCTAGAAAAGAAATTTGGGCAGTCTTCTGTTTTTGTTGCATCAACTTTGCTTGAAAATGG
upper sequence: Vv03s0038g04250.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G177631_T01 (Zea mays), 3'ss of exon 9
----------------------------------------------------------------------aaaaccatgattac----ttcaatttgttgttatca--catattcctttttgcataata----------cattc---tatttgcctcacttctaattttattatttaactgtcatatagGGATTGAGAGTGAGAAGTCAACTATGTTGTCTGAGACGAAATTGGAGAAGAAGTTTGGGCAGTCTCCTGTGTTTGTTGCATCAACTCTTCTTGAGGATGG
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gtactgtcaacctttcaaacatagcttacaacagcaccgctagagttcaaaggcatatgcttagatttcaaaaaccaggacaatcctgttcaaccatttcctgtcgacttcactacctgttgtgtaaaagggaggagagcatttctgtctctatttgacacttgtaaataacatttcactgttctccagGTGCTGATATCGAGAAGGCCGGAATCGTAAATCAACAGAAACTAGAGAAGAAATTTGGGCAGTCTTCTGTTTTTGTCGCATCAACACTTCTTGAGAACGG
upper sequence: Vv03s0038g04250.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G082580_T01 (Zea mays), 3'ss of exon 9
----------------------------------------------------------------------aaaaccatgat--tacttcaatttgttgttatcacat-------attcctttttgcataat---------acattc---tatttgcctcacttctaattttattatttaactgtcatatagGGATTGAGAGTGAGAAGTCAACTATGTTGTCTGAGACGAAATTGGAGAAGAAGTTTGGGCAGTCTCCTGTGTTTGTTGCATCAACTCTTCTTGAGGATGG
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gtgttgtcaacctttcaaacatagcttacaacagcaccgttagagttcaaaggcatattcttagatataaaaaaccaggacagttcttctgttaatccatttcatgttgacttcactacctgttgtgtaaatggatgaaagcatttctgtttctatttgacacttgtgaataacattgcactgttctccagGTGCAGATATTGAGAAGGCTGGAATTGTAAATCAACAGAAACTAGAAAAGAAATTTGGGCAGTCTTCTGTTTTTGTTGCATCGACACTTCTTGAGAATGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714301|gb|FC064180.1|FC064180EST: GCTTTAGAGGGCATTGAGGAGGGCATTGAAG GGATTGAGAGTGAGAAGTCAACTATGTTGTCTGAGACGAAATTGGAGAAGA
genomic: GCTTTAGAGGGCATTGAGGAGGGCATTGAAGgtaaaaacta ... tgtcatatagGGATTGAGAGTGAGAAGTCAACTATGTTGTCTGAGACGAAATTGGAGAAGA
EST:
gi|30304878|gb|CB981672.1|CB981672EST: TTCTGGAGCACCTGTATTTGCTTTAGAGGGCATTGAGGAGGGCATTGAAG GGATTGAGAGTGAGAAGTCAACTATGTTGTCTGAGACGAAATTGGAGAAGA
genomic: TTCTGGAGCACCTGTATTTGCTTTAGAGGGCATTGAGGAGGGCATTGAAGgtaaaaacta ... tgtcatatagGGATTGAGAGTGAGAAGTCAACTATGTTGTCTGAGACGAAATTGGAGAAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcataatacattctatttgcctcacttctaattttattatttaactgtcatatagGGATTGAGAGTGAGAAGTCAACTATGTTGTCTGAGACGAAATTGGAGAAGAAGTTTGGGCAGTCTCCTGTGTTTGTTGCATCAACTCTTCTTGAGGATGG
ttctaattttattatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaaccatgattacttcaatttgttgttatcacatattcctttttgcataatacattctatttgcctcacttctaattttattatttaactgtcatatagGGATTGAGAGTGAGAAGTCAACTATGTTGTCTGAGACGAAATTGGAGAAGAAGTTTGGGCAGTCTCCTGTGTTTGTTGCATCAACTCTTCTTGAGGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
-aaaccat
- - - - - - - - - - - - - - - - - - - - -ttttgca