Sequence
atgc intronic sequence ATGC exonic sequence...ctcctattagttgtcattttttttttcagcatgatttcctttgaagttctcttatctttaatatcagaaactaatttctcaccattctattaaactacagAAGCTCGGAGACATCACAGAAATGACCTTTGGTGGCCGTTATGTTATACTGATGATGGCACTCTTCTCAATTTATACTGGTTTGATTTATAATGAGTTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g00290.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA11G12120.1 (Glycine max), 3'ss of exon 11
ctcctattagttgtcattttttttttcagcatgatttcc---tttgaagttctcttatctttaatatcagaaactaatttctcaccat----tctat-taaactacagAAGCTCGGAGACATCACAGAAATGACCTTTGGTGGCCGTTATGTTATACTGATGATGGCACTCTTCTCAATTTATACTGGTTTGATTTATAATGAGTTCT
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-------tagttagggtctctttcccctg-atgaaccagagagttaaagacaaaaaaaagtgtatgttttttactagtcttctaacatgaaatctgtgtgaaaaacagAAGCTTGATGACATCACGGAGATGACTTTTGGAGGTCGTTATGTTATTTTGTTGATGGCAATATTCTCAATCTACACTGGCTTTATCTATAATGAGTTCT
upper sequence: Vv03s0038g00290.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA12G04330.1 (Glycine max), 3'ss of exon 11
--------------------------------------ctcctattagttgtcattttttttttcagcatgatttcctttgaag-ttctcttatctttaatatcaga-------------aactaatttctcaccat-------tctattaaactacagAAGCTCGGAGACATCACAGAAATGACCTTTGGTGGCCGTTATGTTATACTGATGATGGCACTCTTCTCAATTTATACTGGTTTGATTTATAATGAGTTCT
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gtatccttttagtttgccttgaaaaaatatcctttaagagtataaaaggcaagcttttatattttaatgggagaaattaagtagattttctccaccttagtagaaagtgtgtgtgttttcaaccagttttctaacatagaatcttcgtgtaaaaaacagAAGCTTGATGACATCACGGAGATGACTTTTGGAGGTCGTTATGTTATTTTGTTGATGGCTATATTCTCAATCTACACTGGCTTTATCTATAATGAGTTCT
upper sequence: Vv03s0038g00290.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT2G21410.1 (Arabidopsis thaliana), 3'ss of exon 11
-------------------------------------------------------------------------------------------ctcctattagttgtcattttttttttcagcatgattt-cctttgaagttctcttatctt--taatatcagaaactaatttctca--ccattctattaaactacagAAGCTCGGAGACATCACAGAAATGACCTTTGGTGGCCGTTATGTTATACTGATGATGGCACTCTTCTCAATTTATACTGGTTTGATTTATAATGAGTTCT
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gtaatacccctaattgacagcatctattttccgactgagcacagtataagattggtttctgtttcagaaaaagttgtgtgcaaatttcaaattcaagaaaattattttgagagttgttactttgattggtcatcaatgtttgtctttcttgcaagttctagatgctaaaccatcaatccttgcttcgtgacaacagAAACTTGGGGATATTATGGAAATGGCTTTTGGTGGCCGTTACGTTATTTTTATGATGTCACTATTCTCAATATACACTGGTTTAATCTACAACGAGTTCT
upper sequence: Vv03s0038g00290.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT4G39080.1 (Arabidopsis thaliana), 3'ss of exon 11
ctcctattagttgtcattttttttttcagcatgatttcctttgaagttctcttatctttaatatcagaaactaatttctc--accatt-ctattaaactacagAAGCTCGGAGACATCACAGAAATGACCTTTGGTGGCCGTTATGTTATACTGATGATGGCACTCTTCTCAATTTATACTGGTTTGATTTATAATGAGTTCT
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---cttgacgtttctaaagatcagattagtctgttgcattttgatgttttgtgcttacaagttctagatgctaacctcttcaatcgttgcttcctgacaacagAAACTTGGGGATATTATGGAAATGGCTTTTGGTGGGCGTTATGTCATTTTGATGATGTCACTCTTCTCAATATACACTGGATTAATCTACAACGAGTTCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351024530|gb|FQ426339.1|FQ426339EST: TACTCGCTACATTGTTTTTTATAATCAGGGAAAAGAAACTCTCCAACCAG AAGCTCGGAGACATCACAGAAATGACCTTTGGTGGCCGTTATGTTATACTG
genomic: TACTCGCTACATTGTTTTTTATAATCAGGGAAAAGAAACTCTCCAATCAGgtaaccagcg ... taaactacagAAGCTCGGAGACATCACAGAAATGACCTTTGGTGGCCGTTATGTTATACTG
EST:
gi|161714584|gb|FC064200.1|FC064200EST: TACTCGCTACAATGCTTTTTATAATCAGGGAAAAGAAACTCTCCAATCAG AAGCTTGGAGACATCACAGAAATGACCTTTGGTGGCCGTTATGTTATACTG
genomic: TACTCGCTACATTGTTTTTTATAATCAGGGAAAAGAAACTCTCCAATCAGgtaaccagcg ... taaactacagAAGCTCGGAGACATCACAGAAATGACCTTTGGTGGCCGTTATGTTATACTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttctcttatctttaatatcagaaactaatttctcaccattctattaaactacagAAGCTCGGAGACATCACAGAAATGACCTTTGGTGGCCGTTATGTTATACTGATGATGGCACTCTTCTCAATTTATACTGGTTTGATTTATAATGAGTTCT
ttctcac putative branch site (score: 2)
ttctatt putative PPT
tttaatatcagaaact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctcctattagttgtcattttttttttcagcatgatttcctttgaagttctcttatctttaatatcagaaactaatttctcaccattctattaaactacagAAGCTCGGAGACATCACAGAAATGACCTTTGGTGGCCGTTATGTTATACTGATGATGGCACTCTTCTCAATTTATACTGGTTTGATTTATAATGAGTTCT
- - - - - - - - - - - - - - gcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcacca