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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatcattagctgccacatttagagctcggattcaccatgttgttcctctttttatctccttatcttagtggaacttctcgtattttgatgtctgtttcagGTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGTTGTAATGTAACAAACAATACAAGTTCACTAGGAATAAGACTTCCAAAGC

Basic information

species Vitis vinifera
transcript Vv02s0087g00740.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT2G35610.1 (Arabidopsis thaliana), 3'ss of exon 10
gtatatcattagctgccacatttagagctcggattcaccatgttgttcctctttttatctccttatcttagtggaacttctcgtattttgatgtctgtttcagGTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGTTGTAATGTAACAAACAATACAAG---TTCACTAGGAATAAGACTTCCAAAGC
                                |  | ||  | | |   | | |   |   | | || |||   || |    | | |   |  | | |||||||||||||| ||||||||||||||||| ||||||| |||||||     ||| ||  | | | |||| || || ||    || |  |   | |   | ||||   
-------------------------gtaatatagccgcccagatatatttttctaattaatcatttcatagaaaaaatgtcaggagtgaaa-atatttttcagGTGAAAGAGTCATGGCTTGATGTTCAGCTTTGTCAAGAAGGAAAAGAAGGATGCGAGGCATCAAATAACACTAGCCCCTCTCGGGTTCTTAAGTTCCCAA---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56688584|gb|CX126487.1|CX126487
EST:     TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAATCAG                         GTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
genomic: TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAAACAGgtatatcatt ... tctgtttcagGTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
EST: gi|352773054|gb|FQ470669.1|FQ470669
EST:     TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAAACAG                         GTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
genomic: TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAAACAGgtatatcatt ... tctgtttcagGTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
EST: gi|110360771|gb|EC924133.1|EC924133
EST:     TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAAACAG                         GTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
genomic: TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAAACAGgtatatcatt ... tctgtttcagGTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
EST: gi|110702634|gb|EE078777.1|EE078777
EST:     ACTCTTTCTTTGACAATTCACTAATGCCCAAACAG                         GTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAAGATCCCCAGGT
genomic: ACTCTTTCTTTGACAATCCACTAATGCCCAAACAGgtatatcatt ... tctgtttcagGTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
EST: gi|56688689|gb|CX126592.1|CX126592
EST:     TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAATCAG                         GTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
genomic: TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAAACAGgtatatcatt ... tctgtttcagGTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
EST: gi|56688204|gb|CX126107.1|CX126107
EST:     TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAATCAG                         GTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
genomic: TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAAACAGgtatatcatt ... tctgtttcagGTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
EST: gi|34364071|gb|CF405656.1|CF405656
EST:     TCAATATTAGAGAATACTCTTTCTTTGACAATNCACTAATGCCCAAACAG                         GTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
genomic: TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAAACAGgtatatcatt ... tctgtttcagGTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
EST: gi|56688359|gb|CX126262.1|CX126262
EST:     TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAATCAG                         GTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
genomic: TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAAACAGgtatatcatt ... tctgtttcagGTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctttttatctccttatcttagtggaacttctcgtattttgatgtctgtttcagGTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGTTGTAATGTAACAAACAATACAAGTTCACTAGGAATAAGACTTCCAAAGC
                                     ttttgat  putative branch site (score: 4)
                                             tctgtttc  CT-rich tract
                                   tattttgat  TA-rich tract