Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttggcttgtttcctacctgcccgttttgggttttctgcaacaacaaccatgtctttgaggactaatcgtttttggtttttttttttttttctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCTCCAAAGGAATGTTCATAAACTCCTGCTATGCCCACTGCCAAACCGAAAT

Basic information

species Vitis vinifera
transcript Vv02s0087g00400.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0087g00400.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA01G35480.1 (Glycine max), 3'ss of exon 11
cttggcttgtttcctacctgcccgt-tttgggttttctgcaa--caacaaccatgtctttgaggactaatcgtttttggtttttttttttttttctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCTCCAAAGGAATGTTCATAAACTCCTGCTATGCCCACTGCCAAACCGAAAT
  |  |  || || |     |   | |||  ||||  |  ||    | |      | |        |    |   |   |||| |   |   ||  ||  |||  ||||||    | ||| | || || || |  |  ||      |||  | |||||||||||||||||| |||| |||||||||||||||||||| |||||
--tcaca-gtatcatgttatcatatctttaagtttggtaaaagcttataggggcctatacagcagttctatgacctcacttttatgcatggattgatttacagGGTTCAGGACAGAATTTTTAAGGGCTATAACTGTGCTTGGCAACTCTTCATCCAAAGGAATGTTCATAGACTCTTGCTATGCCCACTGCCAAACTGAAAT

upper sequence: Vv02s0087g00400.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA09G35050.4 (Glycine max), 3'ss of exon 11
cttggcttgtttcctacct--gcccgttttgggttttctg----caacaacaaccatgtctttgaggactaatcgtttttggtttttttttttttttctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCTCCAAAGGAATGTTCATAAACTCCTGCTATGCCCACTGCCAAACCGAAAT
      |  | |||| |    |   | |    | |||  |    | |  | |  | ||           |    |   |   |||| |   |  |||  ||  |||  ||||||    | ||| | || || || |  |  ||      |||  | || ||||||||||||||| |||| |||||||||||||||||||| |||||
------tcatatccttctgaagtttggtaaaagcttttagggccctatgaaattcctgatcacagcagttctatgacctcacttttatggatggtttgatttacagGCTTCAGGACAGAATTTTTAAGGGCTATAACTGTGCTAGGCAACTCTTCATCTAAAGGAATGTTCATAGACTCTTGCTATGCCCACTGCCAAACTGAAAT

upper sequence: Vv02s0087g00400.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA16G17150.1 (Glycine max), 3'ss of exon 11
cttggcttgtttcctacctgcccgttttgggttttctgcaacaac-aaccatgtctttgaggactaatcgtttttggtttttttttttttttctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCTCCAAAGGAATGTTCATAAACTCCTGCTATGCCCACTGCCAAACCGAAAT
 |||   ||| |       || | ||   |    |      |||  ||  |  |  ||    ||||||    | |           |||| |  || | ||| |||| |  | | ||    |  ||  | |  |   |    | |||  | || ||||||||||||||| |||| |||||||| ||||||||||| |||  
-ttgatctgtatttacagagctcattagagagcctacaatccaattaaataactaatttttaactaatatcctgtaacaagaacagttttgtgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCATCTAAAGGAATGTTCATAGACTCTTGCTATGCTCACTGCCAAACAGAATC

upper sequence: Vv02s0087g00400.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA16G08230.1 (Glycine max), 3'ss of exon 10
cttggcttgtttcctacctgcccgttttgggttttctgcaacaacaaccatgtctttgaggactaatcgtttttggtttt--tttttttttttctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCTCCAAAGGAATGTTCATAAACTCCTGCTATGCCCACTGCCAAACCGAAAT
 ||  |   ||   ||   ||   |  | |  || |   |||| |||   | |     |   |||  |  |||  ||     | |  |||| |  || ||||  ||||      | || |  || ||| | |  |   |   ||  || || || ||||||||||| ||  |||| |||||||||||||||||||| |||| 
gttatccatttgagtaaaagcttctagtagagttcca--aacagcaatatttttcaccacttctacgccatttgagtgaaaatatagttttgtgattttcagGCTTCAAAAGTGAATTCCAAAGGGCATTGAGTGAGGTAGGAGATTCTCCATCTAAAGGAATGTTTATTGACTCTTGCTATGCCCACTGCCAAACAGAAAC

upper sequence: Vv02s0087g00400.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA16G08240.1 (Glycine max), 3'ss of exon 11
cttggcttgtttcctacctgcccgttttgggttttctgcaacaacaaccatgtctttgaggactaat-cgtttttggtttt----tttttttttttctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCTCCAAAGGAATGTTCATAAACTCCTGCTATGCCCACTGCCAAACCGAAAT
    |         |   |    | ||   ||      ||| |||||| || | ||| |  |||  |  |   ||||  |     | |   ||| |  || ||||  |||| |    | ||    || ||| | |  |   |   ||  || || || ||||||||||| ||  |||| |||||||||||||||||||| ||| |
----gtcatccatttgagtaagagcttctagtagagctcaa-aacaacaatatttttcaccacttctatgccgttggagtgaaaatatagctttgtgattttcagGCTTCAAGAGTGAATTCGAAAGGGCATTGAGTGAGGTAGGAGATTCTCCATCTAAAGGAATGTTTATTGACTCTTGCTATGCCCACTGCCAAACAGAATT

upper sequence: Vv02s0087g00400.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA16G17120.1 (Glycine max), 3'ss of exon 10
---cttggcttgtttcctacctgcccgttttgggtttt---ctgcaacaacaaccatgtctttgaggactaatcgtttttggtttttttttttttttctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCTCCAAAGGAATGTTCATAAACTCCTGCTATGCCCACTGCCAAACCGAAAT
    ||   |||  |   | ||    ||   | |||     |||||| |     ||   |||  |  || ||| |  |     | |  |||| |  | ||   |||  |||| |    | ||    || ||| | |  |   |   ||  || || || ||||||||||| ||  |||| |||||||||||||||||||| |||  
gtcattcatttgagtaagagctaatagta--gagttccagactgcaatatttttcaccacttctac-accaattgagtgaaagtatagttttgtgatttt---cagGCTTCAAGAGTGAATTCGAAAGGGCATTGAGTGAGGTAGGAGATTCTCCATCTAAAGGAATGTTTATTGACTCTTGCTATGCCCACTGCCAAACAGAACC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110376481|gb|EC941546.1|EC941546
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110715153|gb|EE092874.1|EE092874
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110714669|gb|EE091838.1|EE091838
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCTATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|30128817|gb|CB914156.1|CB914156
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110418349|gb|EC984496.1|EC984496
EST:     TTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCTATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: TTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110377757|gb|EC942842.1|EC942842
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|30251405|gb|CB969138.1|CB969138
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110391590|gb|EC956576.1|EC956576
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|45770699|gb|CN006551.1|CN006551
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCGGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|18459501|gb|BM437779.1|BM437779
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110375405|gb|EC940389.1|EC940389
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCCAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110383471|gb|EC947846.1|EC947846
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|45770703|gb|CN006555.1|CN006555
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110703741|gb|EE080850.1|EE080850
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCTATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|45770871|gb|CN006723.1|CN006723
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110423673|gb|EC990024.1|EC990024
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCTATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110701134|gb|EE078400.1|EE078400
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCTATGCAAG                         ATTTCAGGGTGCAGTTTCTTAATGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110386492|gb|EC951090.1|EC951090
EST:     GCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: GCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110360568|gb|EC923781.1|EC923781
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110364047|gb|EC927689.1|EC927689
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110361656|gb|EC925145.1|EC925145
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110382623|gb|EC946935.1|EC946935
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110375774|gb|EC940791.1|EC940791
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110362506|gb|EC926047.1|EC926047
EST:     CAAGCTTGATATCAAGGACTGCTTATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110396078|gb|EC961753.1|EC961753
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110692352|gb|EE071502.1|EE071502
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCTATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110369475|gb|EC933635.1|EC933635
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110715685|gb|EE094014.1|EE094014
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110384265|gb|EC948691.1|EC948691
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|45770999|gb|CN006851.1|CN006851
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110362390|gb|EC925920.1|EC925920
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|45771174|gb|CN007026.1|CN007026
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|33410372|gb|CF215999.1|CF215999
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|22012950|gb|BQ797984.1|BQ797984
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|351029203|gb|FQ435403.1|FQ435403
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
EST: gi|110693635|gb|EE070040.1|EE070040
EST:     CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCTATGCAAG                         ATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT
genomic: CAAGCTTGATATCAAGGACTGCTCATCCTCCCAACTTGAAGCCATGCAAGgtcactccca ... tctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaccatgtctttgaggactaatcgtttttggtttttttttttttttctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCTCCAAAGGAATGTTCATAAACTCCTGCTATGCCCACTGCCAAACCGAAAT
               gactaat  putative branch site (score: 2)
                 ctaatcgtttttggtt  CT-rich tract
                  taatcgtttttggttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cttggcttgtttcctacctgcccgttttgggttttctgcaacaacaaccatgtctttgaggactaatcgtttttggtttttttttttttttctttctcagATTTCAGGGTGCAGTTTCTTAGTGCAATCAAAGGACTGATAGGCTCCCCCTCCAAAGGAATGTTCATAAACTCCTGCTATGCCCACTGCCAAACCGAAAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- tggcttg
- - - - - - - -acctgcc
- - - - - - - - - - - - ttttggg
- - - - - - - - - - - - - - - - - -ctgcaac
- - - - - - - - - - - - - - - - - - - - - -acaacca