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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcttcctcatcctaccagtcttgcttttacctaagatattatttccgcatgtaacttttttcactgcagGAAAGTGGTCGAGCTGGAAGAGATGGACTCCCTTCTGAATGCCTGCTCTATTTTAGGCCTGGGGATGTACCTAGGCAG

Basic information

species Vitis vinifera
transcript Vv02s0087g00070.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0087g00070.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA09G34860.1 (Glycine max), 3'ss of exon 11
---------------------------------gtttcttcctcatcctaccagtcttgcttttacctaagatattatttccgcatgtaacttttttcactgcagGAAAGTGGTCGAGCTGGAAGAGATGGACTCCCTTCTGAATGCCTGCTCTATTTTAGGCCTGGGGATGTACCTAGGCAG
                                  ||   | || |  ||  |||| |       | | |||  ||  |||    ||||||||||| |     ||||||||||||||||||||  |||||||||| |||||||||||||| || || ||||| || || ||||  ||  | |||
acgttttaataattaatacaaagaaccattgatcttaaatgcttaagctggcagt-tgaaagaaagccaagggatggttttt--atgtaacttttcttg--acagGAAAGTGGTCGAGCTGGCCGAGATGGACTTCCTTCTGAATGCCTACTGTACTTTAGACCCGGTGATGCTCCACGTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccagtcttgcttttacctaagatattatttccgcatgtaacttttttcactgcagGAAAGTGGTCGAGCTGGAAGAGATGGACTCCCTTCTGAATGCCTGCTCTATTTTAGGCCTGGGGATGTACCTAGGCAG
                                  atgtaac  putative branch site (score: 3)
                                        cttttttcact  CT-rich tract
                 taagatattattt  TA-rich tract