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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctctaaggtttttaagctaatattactgaacatacattcatcctgattttaaccatcatacatgtgattgcagGTGAAGGAATCTGTAAAATTGCGTCAGATAATGCAAACAATTCTCACGTTGGGAAATGCACTGAATCAGGGCACAGCACGAG

Basic information

species Vitis vinifera
transcript Vv02s0033g01360.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA09G34830.1 (Glycine max), 3'ss of exon 11
gta-tctctaaggtttttaagctaatattactgaacatacattcatcctgattttaaccatcatacatgtgattgcagGTGAAGGAATCTGTAAAATTGCGTCAGATAATGCAAACAATTCTCACGTTGGGAAATGCACTGAATCAGGGCACAGCACGAG
||| | | |||    | |  | | | |    || |  ||   |    ||| || |    || |  ||||   || |||||||| ||||||| |||||||||||| |||||||| || ||||| ||  |||| |||||  ||||||| || ||| ||||||
gtactgtttaattgctcttggttgacaaacatggaggtattattgggctgcttct--ttattactcatgc--ttacagGTGAAAGAATCTGGAAAATTGCGTCAAATAATGCAGACCATTCTTACTCTGGGCAATGCCTTGAATCAAGGAACAACACGAG

upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA04G14770.1 (Glycine max), 3'ss of exon 11
gtatc-tctaaggtttttaagctaatattactgaacatacattcatcctgatt-ttaaccatcatacatgtgattgcagGTGAAGGAATCTGTAAAATTGCGTCAGATAATGCAAACAATTCTCACGTTGGGAAATGCACTGAATCAGGGCACAGCACGAG
|||   | |||      | || | | |    ||||   |   |    ||| || || |   |  |||   || |  |||||||| |||||||  ||||||||||| |||||||| || ||||| ||  |||| |||||  ||||||| || |||||||| |
gtactgtttaattgcccttagttgacaaacatgaaggcattattgggctgcttctttatgctattactcatgctgacagGTGAAAGAATCTGGGAAATTGCGTCAAATAATGCAGACCATTCTTACACTGGGCAATGCCTTGAATCAAGGAACAGCACGGG

upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT1G31810.1 (Arabidopsis thaliana), 3'ss of exon 11
gtatctctaaggtttttaagctaatattactg--aacatacattcatcctgatt-ttaaccatcatacatgtgattgcagGTGAAGGAATCTGTAAAATTGCGTCAGATAATGCAAACAATTCTCACGTTGGGAAATGCACTGAATCAGGGCACAGCACGAG
||||     | | |   |   |   | |  ||  || |||  | |||| || |  ||||   ||||   | || |  ||||||||||| |||| ||| |||||||| || |||||||||||| | |||||||||||||| || |||||||| || ||  |||
gtatagtggatggtgagatcttctaagtcatggcaatatatctccatcttggtaattaagtttcattattatg-taccagGTGAAGGAGTCTGCAAAGTTGCGTCAAATTATGCAAACAATTTTAACGTTGGGAAATGCTCTAAATCAGGGAACTGCGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatattactgaacatacattcatcctgattttaaccatcatacatgtgattgcagGTGAAGGAATCTGTAAAATTGCGTCAGATAATGCAAACAATTCTCACGTTGGGAAATGCACTGAATCAGGGCACAGCACGAG
                            ttttaac  putative branch site (score: 2)
                         tgattttaa  TA-rich tract