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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattctttttgggaatttattcaatgatatagtgtccgatctagcaatatgcattgttgcctttctctgagtttaggatgtggtgatagccagttatttgactaatttacactgttctttttgtggcagAGTTGCTTTTATGTCCCACCATCCCTTCGTCCTCGAACTGCTGTGACTAGGACACCCCCATCTG

Basic information

species Vitis vinifera
transcript Vv02s0033g01110.t01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34543467|gb|CF511699.1|CF511699
EST:     AGCCTTGGAGGCTCTTCAGCATCCTTTCTTCCAG                         AGTTGCTTTTATGTCCCACCATCCCTTCGTCCTCGAACTGCTGTGACTAGG
genomic: AGCCTTGGAGGCTCTTCAGCATCCTTTCTTCCAGgtattctttt ... tttgtggcagAGTTGCTTTTATGTCCCACCATCCCTTCGTCCTCGAACTGCTGTGACTAGG
EST: gi|33404620|gb|CF210247.1|CF210247
EST:     CCTGCAAGAGGCCAACAGCCTTGGAGGCTCTTCAGCATCCTTTCTTCCAG                         AGTTGCTTTTATGTCCCACCATCCCTTCGTCCTCGAACTGCTGTGACTAGG
genomic: CCTGCAAGAGGCCAACAGCCTTGGAGGCTCTTCAGCATCCTTTCTTCCAGgtattctttt ... tttgtggcagAGTTGCTTTTATGTCCCACCATCCCTTCGTCCTCGAACTGCTGTGACTAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggatgtggtgatagccagttatttgactaatttacactgttctttttgtggcagAGTTGCTTTTATGTCCCACCATCCCTTCGTCCTCGAACTGCTGTGACTAGGACACCCCCATCTG
                         gactaat  putative branch site (score: 2)
 ctgttcttttt  putative PPT
 ttatttgactaattta  TA-rich tract