1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...acttatgtagagtgttaataatttgcctttgttcttatcatctgttttgtttaagatttgccttgtgctaactgcctgtatttgctcttggatctattagGCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCATCAGTCTAGATGTTCAAAAACTGGTTCAGGATCCAG
species | Vitis vinifera |
transcript | Vv02s0025g03370.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATG GCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCATEST: gi|351026069|gb|FQ428081.1|FQ428081
genomic: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATGgtatggacat ... gatctattagGCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
EST: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATG GCCATTGGACACACGAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCATEST: gi|349829212|gb|FQ419744.1|FQ419744
genomic: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATGgtatggacat ... gatctattagGCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
EST: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATG GCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCATEST: gi|27584138|gb|CB006833.1|CB006833
genomic: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATGgtatggacat ... gatctattagGCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
EST: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATG GCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCATEST: gi|110699701|gb|EE076931.1|EE076931
genomic: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATGgtatggacat ... gatctattagGCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
EST: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATG GCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCATEST: gi|349817348|gb|FQ405352.1|FQ405352
genomic: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATGgtatggacat ... gatctattagGCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
EST: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATG GCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCATEST: gi|351054267|gb|FQ450349.1|FQ450349
genomic: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATGgtatggacat ... gatctattagGCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
EST: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATG GCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCATEST: gi|351028430|gb|FQ427326.1|FQ427326
genomic: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATGgtatggacat ... gatctattagGCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
EST: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATG GCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
genomic: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATGgtatggacat ... gatctattagGCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
tttgtttaagatttgccttgtgctaactgcctgtatttgctcttggatctattagGCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCATCAGTCTAGATGTTCAAAAACTGGTTCAGGATCCAG
tgctaac putative branch site (score: 1)
ttaagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttatgtagagtgttaataatttgcctttgttcttatcatctgttttgtttaagatttgccttgtgctaactgcctgtatttgctcttggatctattagGCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCATCAGTCTAGATGTTCAAAAACTGGTTCAGGATCCAG
- - - - - - - - - - - -tgccttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgcct