1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtatttaaatgatttttatttttatatacgtgatactctctgcattaccagatctttttctcaagttttctggcctcattcatttgactatttcatatagAAAGCGGCATTTCTTGAAGAGTGGTTTAAGGCGCTATGCTCTTCACTAGGGGAGACAAGTACCCAACCTGAGGCTGATAGAAAGAAAGAGATGATCTCTC
species | Vitis vinifera |
transcript | Vv02s0025g03050.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCCTTGCATCAAGCAGTGATCACCAACCTCTTAAAGATTTTCTTGTGAAA AAAGCGGCATTTCTTGAAGAGTGGTTTAAGGCGCTATGCTCTTCACTAGGGEST: gi|351027852|gb|FQ448422.1|FQ448422
genomic: GCCTTGCATCAAGCAGTGATCACCAACCTCTTAAAGATTTTCTTGTGAAAgtaagcattt ... tttcatatagAAAGCGGCATTTCTTGAAGAGTGGTTTAAGGCGCTATGCTCTTCACTAGGG
EST: GCCTTGCATCAAGCAGTGATCACCAACCTCTTAAAGATTTTCTTGTGAAA AAAGCGGCATTTCTTGAAGAGTGGTTTAAGGCGCTATGCTCCTCACTAGGG
genomic: GCCTTGCATCAAGCAGTGATCACCAACCTCTTAAAGATTTTCTTGTGAAAgtaagcattt ... tttcatatagAAAGCGGCATTTCTTGAAGAGTGGTTTAAGGCGCTATGCTCTTCACTAGGG
taccagatctttttctcaagttttctggcctcattcatttgactatttcatatagAAAGCGGCATTTCTTGAAGAGTGGTTTAAGGCGCTATGCTCTTCACTAGGGGAGACAAGTACCCAACCTGAGGCTGATAGAAAGAAAGAGATGATCTCTC
atttgac putative branch site (score: 4)
ctatttc CT-rich tract
tatttcatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttaaatgatttttatttttatatacgtgatactctctgcattaccagatctttttctcaagttttctggcctcattcatttgactatttcatatagAAAGCGGCATTTCTTGAAGAGTGGTTTAAGGCGCTATGCTCTTCACTAGGGGAGACAAGTACCCAACCTGAGGCTGATAGAAAGAAAGAGATGATCTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - tctctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcctc