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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgtttttcttatttttttcattctctttatgctcagatcattacttcatgttgttaagtgtctccaaatttttcatgtgtagAACAAGGGCCTAATGAAGGAGGGAGAGCATGTGACTCTTGTTCAAAGTGGAGCACAACCAATCTGGCGTGTTGAATCTACTCACCACATCCAAGTTCGTA

Basic information

species Vitis vinifera
transcript Vv02s0012g01170.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0012g01170.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA11G04490.1 (Glycine max), 3'ss of exon 8
gttagtgtttttcttatttttttcattctctttatgctcagatcattacttcatgttgttaagtgt--ctccaaatttttcatgtgt-agAACAAGGGCCTAATGAAGGAGGGAGAGCATGTGACTCTTGTTCAAAGTGGAGCACAACCAATCTGGCGTGTTGAATCTACTCACCACATCCAAGTTCGTA
||||||  | |    ||    | ||      ||    |    |   || ||  | || |||| |||  ||  ||| | | ||| | | |||  |||||||   |  | |||||| ||||||| ||||||||||||||||||||||||||||||||||| |  ||||| ||||||||||| ||||||||||
gttagtaatatctccatcacgtgcacaaatattccttttc--ttgatattttttctt-ttaaatgttgctgaaaagtctccatatttcagAGTAAGGGCCATTTACACGAGGGACAGCATGTTACTCTTGTTCAAAGTGGAGCACAACCAATCTGGCGAGAGGAATCCACTCACCACATACAAGTTCGTA

upper sequence: Vv02s0012g01170.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA01G40860.1 (Glycine max), 3'ss of exon 10
gttagtgtttttcttatttttttcattctctttatgctcagatcattacttcatgttgttaagtgt--ctccaaatttttcatgtgt-agAACAAGGGCCTAATGAAGGAGGGAGAGCATGTGACTCTTGTTCAAAGTGGAGCACAACCAATCTGGCGTGTTGAATCTACTCACCACATCCAAGTTCGTA
||||||  | |    ||    | || |    ||    |    |   || ||  | || |||| |||  ||  ||| | | ||| | | |||  ||| | |   |  | |||||| | ||||| || ||||||||||||||||||||||||||||||||||  ||||| ||||||||||| |||||||| |
gttagtaatatctccatcacctgcactaatattccctttt--ttgatattttttctt-ttaaatgttgctgaaaagtctccatatttcagAGTAAGAGTCATTTACACGAGGGACAACATGTCACACTTGTTCAAAGTGGAGCACAACCAATCTGGCGTGAGGAATCCACTCACCACATACAAGTTCGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110711036|gb|EE087773.1|EE087773
EST:     TTTCAGATGATGCTGANGAGACCTTCTCTCGAGCCCTCAGCATACTAGTG                         AAACANGGGCCTAATGAAGGAGGNAGAGCATGTGACTCTTGTTCAAAGTGG
genomic: TTTCAGATGATGCTGAGGAGACCTTCTCTCGAGCCCTCAGCATACTAGTGgttagtgttt ... tcatgtgtagAA-CAAGGGCCTAATGAAGGAGGGAGAGCATGTGACTCTTGTTCAAAGTGG
EST: gi|30131201|gb|CB916540.1|CB916540
EST:     TTTCAGATGATGCTGAGGAGACCTTCTCTCGAGCCCTCAGCATACTAGTG                         AACAAGGGCCTAATGAAGGAGGGAGAGCATGTGACTCTTGTTCAAAGTGGA
genomic: TTTCAGATGATGCTGAGGAGACCTTCTCTCGAGCCCTCAGCATACTAGTGgttagtgttt ... tcatgtgtagAACAAGGGCCTAATGAAGGAGGGAGAGCATGTGACTCTTGTTCAAAGTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgctcagatcattacttcatgttgttaagtgtctccaaatttttcatgtgtagAACAAGGGCCTAATGAAGGAGGGAGAGCATGTGACTCTTGTTCAAAGTGGAGCACAACCAATCTGGCGTGTTGAATCTACTCACCACATCCAAGTTCGTA
                                         tttttcat  CT-rich tract
                                      aaatttttcat  TA-rich tract