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...gttcttatcagctgtgttgtataaattcaaagaggctttctttacgattttcatgtgacctcaaaaattgatatttatgctcccttgttttcatccttagTATGATGCTGTTGGATGGGCGCCTAAAGAATATAATCCAGATGACAAACAGTCTACTGGTGGGCAGGATCGAGGAAACGGTGACCCTGCAGGTCAAAAGG
species | Vitis vinifera |
transcript | Vv02s0012g00870.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CAAGCAGCCTTGCAGCAGCTGCAATTGAGGCAGCTACATTTGCTCAACAA TATGATGCTGTTGGATGGGCGCCTAAAGAATATAATCCAGATGACAAACAGEST: gi|352764157|gb|FQ467727.1|FQ467727
genomic: CAAGCAGCCTTGCAGCAGCTGCAATTGAGGCAGCTACATTTGCTCAACAAgttaatgatc ... tcatccttagTATGATGCTGTTGGATGGGCGCCTAAAGAATATAATCCAGATGACAAACAG
EST: CAAGCAGCCTTGCAGCAGCTGCAATTGAGGCAGCTACATTTGCTCAACAA TATGATGCTGTTGGATGGGCGCCTAAAGAATATAATCCAGATGACAAACAGEST: gi|28962295|gb|CB341328.1|CB341328
genomic: CAAGCAGCCTTGCAGCAGCTGCAATTGAGGCAGCTACATTTGCTCAACAAgttaatgatc ... tcatccttagTATGATGCTGTTGGATGGGCGCCTAAAGAATATAATCCAGATGACAAACAG
EST: CAAGCAGCCTTGCAGCAGCTGCAATTGAGGCAGCTACATTTGCTCAACAA TATGATGCTGTTGGATGGGCGCCTAAAGAATATAATCCAGATGACAAACAG
genomic: CAAGCAGCCTTGCAGCAGCTGCAATTGAGGCAGCTACATTTGCTCAACAAgttaatgatc ... tcatccttagTATGATGCTGTTGGATGGGCGCCTAAAGAATATAATCCAGATGACAAACAG
gattttcatgtgacctcaaaaattgatatttatgctcccttgttttcatccttagTATGATGCTGTTGGATGGGCGCCTAAAGAATATAATCCAGATGACAAACAGTCTACTGGTGGGCAGGATCGAGGAAACGGTGACCCTGCAGGTCAAAAGG
aattgat putative branch site (score: 4)
tgctcccttgttttca putative PPT
tcaaaaattgatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcttatcagctgtgttgtataaattcaaagaggctttctttacgattttcatgtgacctcaaaaattgatatttatgctcccttgttttcatccttagTATGATGCTGTTGGATGGGCGCCTAAAGAATATAATCCAGATGACAAACAGTCTACTGGTGGGCAGGATCGAGGAAACGGTGACCCTGCAGGTCAAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - cagctgt
- - - - - - - - - - - - - - aaagagg
- - - - - - - - - - - - - - - - - - - - - - - - - -catgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcaaa