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...taagctttttttttttagctagaagaaacatggaatttagtcagttgaatttgattttttccattatactgaagtaactgatctctgctctcttgtccagTTTTTGGTTCTTCTGGAAATGGAAGTTGTCCTCTTCCTGGACATCATTATATGTGGAGTAATTCGCATCACCCTCAGTCTCCAGGCATGATGTGGCCGAA
species | Vitis vinifera |
transcript | Vv01s0150g00090.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTTGTCTGGAGCAAACTCGAATGGCCTCACAGTTGAACTTAATGATGGTG TTTTTGGTTCTTCTGGAAATGGAAGTTGTCCTCTTCCTGGGCATCATTATAEST: gi|27582354|gb|CB005049.1|CB005049
genomic: GTTGTCTGGAGCAAACTCGAATGGCCTCACAGTTGAACTTAATGATGGTGgtaagtgtga ... tcttgtccagTTTTTGGTTCTTCTGGAAATGGAAGTTGTCCTCTTCCTGGACATCATTATA
EST: GTTGTCTGGAGCAAACTCGAATGGCCTCACAGTTGAACTTAATGATGGTG TTTTTGGTTCTTCTGGAAATGGAAGTTGTCCTCTTCCTGGGCATCATTATAEST: gi|27584797|gb|CB007492.1|CB007492
genomic: GTTGTCTGGAGCAAACTCGAATGGCCTCACAGTTGAACTTAATGATGGTGgtaagtgtga ... tcttgtccagTTTTTGGTTCTTCTGGAAATGGAAGTTGTCCTCTTCCTGGACATCATTATA
EST: GTTGTCTGGAGCAAACTCGAATGGCCTCACAGTTGAACTTAATGATGGTG TTTTTGGTTCTTCTGGAAATGGAAGTTGTCCTCTTCCTGGGCATCATTATAEST: gi|110720716|gb|EE096882.1|EE096882
genomic: GTTGTCTGGAGCAAACTCGAATGGCCTCACAGTTGAACTTAATGATGGTGgtaagtgtga ... tcttgtccagTTTTTGGTTCTTCTGGAAATGGAAGTTGTCCTCTTCCTGGACATCATTATA
EST: GTTGTCTGGAGCAAACTCAAATGGCCTCACAGTTGAACTTAATGATGGTG TTTTTGGTTCTTCTGGAAATGGAAGTTGTCCTCTTCCTGGACATCATTATAEST: gi|110732176|gb|EE107233.1|EE107233
genomic: GTTGTCTGGAGCAAACTCGAATGGCCTCACAGTTGAACTTAATGATGGTGgtaagtgtga ... tcttgtccagTTTTTGGTTCTTCTGGAAATGGAAGTTGTCCTCTTCCTGGACATCATTATA
EST: GTTGTCTGGAGCAAACTCGAATGGCCTCACAGTTGAACTTAATGATGGTG TTTTTGGTTCTTCTGGAAATGGAAGTTGTCCTCTTCCTGGGCATCATTATA
genomic: GTTGTCTGGAGCAAACTCGAATGGCCTCACAGTTGAACTTAATGATGGTGgtaagtgtga ... tcttgtccagTTTTTGGTTCTTCTGGAAATGGAAGTTGTCCTCTTCCTGGACATCATTATA
tgaatttgattttttccattatactgaagtaactgatctctgctctcttgtccagTTTTTGGTTCTTCTGGAAATGGAAGTTGTCCTCTTCCTGGACATCATTATATGTGGAGTAATTCGCATCACCCTCAGTCTCCAGGCATGATGTGGCCGAA
tctctgctctcttgtc CT-rich tract
attttttccattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagctttttttttttagctagaagaaacatggaatttagtcagttgaatttgattttttccattatactgaagtaactgatctctgctctcttgtccagTTTTTGGTTCTTCTGGAAATGGAAGTTGTCCTCTTCCTGGACATCATTATATGTGGAGTAATTCGCATCACCCTCAGTCTCCAGGCATGATGTGGCCGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - -gaagaaa
- - - - - - - - - - - - - - catggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctctgc