Sequence
atgc intronic sequence ATGC exonic sequencegtatatatatcctcaaatttagaattagtaagttctcagttgctccagttgacctgttactatcaagtttaagtgcctttctgtgggaattgcagAATGACCTGGTACATGGTTGGGGTCTTGACTTTGCTCTCAGAAGATGTGTAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA18G01710.1 (Glycine max), 3'ss of exon 11
---------------------------------gtatatatatcctcaaatttagaattagtaagttctcagttgctccagttgacctgttact-atcaagtttaagtgcctttctgtgggaattgcagAATGACCTGGTACATGGTTGGGGTCTTGACTTTGCTCTCAGAAGATGTGTAGAG
| | || ||| | | || || | | | | |||| ||| | || ||| | | | | | ||||||||||||| |||| || || ||||||||||| |||||||| ||||||||||| |||
gttgactgattaatcctgaagtcctaattgctttaaaagatgcccttgactagttgttttttatgatgcatccttgacaagttctttaagcacttagtaaaattatggttgtaccacttgacattgcagAATGACTTGGTCCACGGGTGGGGTCTTGATTTTGCTCTTAGAAGATGTGTTGAG
upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA11G37770.1 (Glycine max), 3'ss of exon 11
---gtatatatatcctcaaatttagaat-tagtaagttctcagttgctccagttgacctgttactatcaagtttaagtgccttt---ctgtgggaattgcagAATGACCTGGTACATGGTTGGGGTCTTGACTTTGCTCTCAGAAGATGTGTAGAG
| | | ||||| || | | | | ||| | | ||||| || | | | || || | || | || ||||||||||| |||| ||||| ||||||||||| |||||||| |||| |||||| |||
gttgactgttaatcctaaagtcctaattgttttaaaagatgtccttgataagttgttctttaagcacttggtaaaattatgattgtaccacttgacatgcagAATGACTTGGTCCATGGGTGGGGTCTTGATTTTGCTCTTAGAAAATGTGTTGAG
upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT1G67850.2 (Arabidopsis thaliana), 3'ss of exon 11
gtatatatatcctcaaatttagaattagtaagttctcagttgctccagttgacctgtta---ctatcaagtttaagtgcctttctgtggg--aattgcagAATGACCTGGTACATGGTTGGGGTCTTGACTTTGCTCTCAGAAGATGTGTAGAG
| | | ||| | | | | | ||| | | | | | | | || | ||| || || | | | |||||||| ||||||| |||||||||||||||||||| |||||||||||||| |||
--gttccttgcttcatcatctgtttcattcttcattcatcttccctaactctctcttcttgcctgccttacttatacgctttaccttaaactgttaacagAATGATTTGGTACACGGTTGGGGTCTTGACTTTGCACTCAGAAGATGTGTTGAG
upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT1G24570.1 (Arabidopsis thaliana), 3'ss of exon 10
gtatatatatcctcaaatttagaattagtaagttctcagttgctccagttgacctgttactatcaagtttaagtgcctttctgtgggaattgcagAATGACCTGGTACATGGTTGGGGTCTTGACTTTGCTCTCAGAAGATGTGTAGAG
|| || | || | || | | || | || || | | | | | | ||| || | | || |||||||| |||| || |||||||||||||||||||| || ||||||||||| |||
-----gttacacttactttattatctattggctccttcatatcttcatataatgtctccttcttgcacctaattgtatatgaaccaaaa--acagAATGATTTGGTTCACGGTTGGGGTCTTGACTTTGCACTGAGAAGATGTGTTGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgctccagttgacctgttactatcaagtttaagtgcctttctgtgggaattgcagAATGACCTGGTACATGGTTGGGGTCTTGACTTTGCTCTCAGAAGATGTGTAGAG
agttgac putative branch site (score: 4)
aagtttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatatatatcctcaaatttagaattagtaagttctcagttgctccagttgacctgttactatcaagtttaagtgcctttctgtgggaattgcagAATGACCTGGTACATGGTTGGGGTCTTGACTTTGCTCTCAGAAGATGTGTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG