1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ctaattatttaaatattgctttttgcctcactttacatttagttttttcctctcggacatgtgcatgaaaactgaaagctaacagatctaatcataacagATGTGGGAGTTGAACAACAATGGCACCCTTTTAAACAGTCATTCTGGTCTATGTGCAACTGTGAATGCGGTGCAAG
species | Vitis vinifera |
transcript | Vv01s0137g00630.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGGAGTTCAATAGAGGTTCATTTTCACCCTGCAAATGGGATGCCAACCAG ATGTGGGAGTTGAACAACAATGGCACCCTTTTAAACAGTCATTCTGGTCTAEST: gi|32245921|gb|CD711740.1|CD711740
genomic: AGGAGTTCAATAGAGGTTCATTTTCACCCTGCAAATGGGATGCCAACCAGgtaactctta ... atcataacagATGTGGGAGTTGAACAACAATGGCACCCTTTTAAACAGTCATTCTGGTCTA
EST: AGGAGTTCAATAGAGGTTCATTTTCACCCTGCAAATGGGATGCCAACCAG ATGTGGGAGTTGAACAACAATGGCACCCTTTTAAACAGTCATTCTGGTCTAEST: gi|18459504|gb|BM437782.1|BM437782
genomic: AGGAGTTCAATAGAGGTTCATTTTCACCCTGCAAATGGGATGCCAACCAGgtaactctta ... atcataacagATGTGGGAGTTGAACAACAATGGCACCCTTTTAAACAGTCATTCTGGTCTA
EST: AGGAGTTCAATAGAGGTTCATTTTCACCCTGCAAATGGGATGCCAACCAG ATGTGGGAGTTGAACAACAATGGCACCCTTTTAAACAGTCATTCTGGTCTAEST: gi|37189485|gb|CF608834.1|CF608834
genomic: AGGAGTTCAATAGAGGTTCATTTTCACCCTGCAAATGGGATGCCAACCAGgtaactctta ... atcataacagATGTGGGAGTTGAACAACAATGGCACCCTTTTAAACAGTCATTCTGGTCTA
EST: AGGAGTTCAATAGAGGTTCATTTTCACCCTGCAAATGGGATGCCAACCAG ATGTGGGAGTTGAACAACAATGGCACCCTTTTAAACAGTCATTCTGGTCTAEST: gi|110380121|gb|EC945365.1|EC945365
genomic: AGGAGTTCAATAGAGGTTCATTTTCACCCTGCAAATGGGATGCCAACCAGgtaactctta ... atcataacagATGTGGGAGTTGAACAACAATGGCACCCTTTTAAACAGTCATTCTGGTCTA
EST: AGGAGTTCAATAGAGGTTCATTTTCACCCTGCAAATGGGATGCCAACCAG ATGTGGGAGTTGAACAACAATGGCACCCTTTTAAACAGTCATTCTGGTCTA
genomic: AGGAGTTCAATAGAGGTTCATTTTCACCCTGCAAATGGGATGCCAACCAGgtaactctta ... atcataacagATGTGGGAGTTGAACAACAATGGCACCCTTTTAAACAGTCATTCTGGTCTA
tttcctctcggacatgtgcatgaaaactgaaagctaacagatctaatcataacagATGTGGGAGTTGAACAACAATGGCACCCTTTTAAACAGTCATTCTGGTCTATGTGCAACTGTGAATGCGGTGCAAG
taatcataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaattatttaaatattgctttttgcctcactttacatttagttttttcctctcggacatgtgcatgaaaactgaaagctaacagatctaatcataacagATGTGGGAGTTGAACAACAATGGCACCCTTTTAAACAGTCATTCTGGTCTATGTGCAACTGTGAATGCGGTGCAAG
- - - - - - - - - - - - -cctcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taacaga