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...tgtgggttgatgatggtgtttaggtgttttttttcttctcttgaggcaattaacatttctttgacttcataagcaattcatgtcttctatgttaatgcagGGTCTTAAGGAGATTGCAGGCAGTATAATATCTGAAAATTCCAGATCTTCAAATGGTATCGTGCAAGATGGTGTTGATAAATTGGATGATCAGCCAAGGA
species | Vitis vinifera |
transcript | Vv01s0026g01700.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGGCAAGTCCCACGGTTTACTCACATCTACAGAAGCTCCAAGTTTCCAG GGTCTTAAGGAGATTGCAGGCAGTATAATATCTGAAAATTCCAGATCTTCAEST: gi|110379389|gb|EC944580.1|EC944580
genomic: CTGGCAAGTCCCACGGTTTACTCACATCTACAGAAGCTCCAAGTTTCCAGgtatccctct ... gttaatgcagGGTCTTAAGGAGATTGCAGGCAGTATAATATCTGAAAATTCCAGATCTTCA
EST: CTGGCAAGTCCCACGGTTTACTCACATCTACAGAAGCTCCAAGTTTCCAG GGTCTTAAGGAGATCGCAGGCAGTATAATATCTGAAAATTCCAGATCTTCAEST: gi|46910317|gb|CN545692.1|CN545692
genomic: CTGGCAAGTCCCACGGTTTACTCACATCTACAGAAGCTCCAAGTTTCCAGgtatccctct ... gttaatgcagGGTCTTAAGGAGATTGCAGGCAGTATAATATCTGAAAATTCCAGATCTTCA
EST: CTGGCAAGTCCCACGGTTTACTCACATCTACAGAAGCTCCAAGTTTCCAG GGTCTTAAGGAGATCGCAGGCAGTATAATATCTGAAAATTCCAGATCTTCAEST: gi|110396076|gb|EC961751.1|EC961751
genomic: CTGGCAAGTCCCACGGTTTACTCACATCTACAGAAGCTCCAAGTTTCCAGgtatccctct ... gttaatgcagGGTCTTAAGGAGATTGCAGGCAGTATAATATCTGAAAATTCCAGATCTTCA
EST: CTGGCAAGTCCCACGGTTTACTCACATCTGCAGAAGCTCCAAGTTTCCAG GGTCTTAAGGAGATCGCAGGCAGTATAATATCTGAAAATTCCAGATCTTCAEST: gi|110361687|gb|EC925180.1|EC925180
genomic: CTGGCAAGTCCCACGGTTTACTCACATCTACAGAAGCTCCAAGTTTCCAGgtatccctct ... gttaatgcagGGTCTTAAGGAGATTGCAGGCAGTATAATATCTGAAAATTCCAGATCTTCA
EST: CTGGCAAGTCCCACGGTTTACTCACATCTACAGAAGCTCCAAGTTTCCAG GGTCTTAAGGAGATCGCAGGCAGTATAATATCTGAAAATTCCAGATCTTCAEST: gi|22011799|gb|BQ796833.1|BQ796833
genomic: CTGGCAAGTCCCACGGTTTACTCACATCTACAGAAGCTCCAAGTTTCCAGgtatccctct ... gttaatgcagGGTCTTAAGGAGATTGCAGGCAGTATAATATCTGAAAATTCCAGATCTTCA
EST: CTGGCAAGTCCCACGGTTTACTCACATCTACAGAAGCTCCAAGTTTCCAG GGTCTTAAGGAGATCGCAGGCAGTATAATATCTGAAAATTCCAGATCTTCAEST: gi|46918277|gb|CN547606.1|CN547606
genomic: CTGGCAAGTCCCACGGTTTACTCACATCTACAGAAGCTCCAAGTTTCCAGgtatccctct ... gttaatgcagGGTCTTAAGGAGATTGCAGGCAGTATAATATCTGAAAATTCCAGATCTTCA
EST: CTGGCAAGTCCCACGGTTTACTCACATCTACAGAAGCTCCAAGTTTCCAG GGTCTTAAGGAGATTGCAGGCAGTATAATATCTGAAAATTCCAGATCTTCA
genomic: CTGGCAAGTCCCACGGTTTACTCACATCTACAGAAGCTCCAAGTTTCCAGgtatccctct ... gttaatgcagGGTCTTAAGGAGATTGCAGGCAGTATAATATCTGAAAATTCCAGATCTTCA
gcaattaacatttctttgacttcataagcaattcatgtcttctatgttaatgcagGGTCTTAAGGAGATTGCAGGCAGTATAATATCTGAAAATTCCAGATCTTCAAATGGTATCGTGCAAGATGGTGTTGATAAATTGGATGATCAGCCAAGGA
tatgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgggttgatgatggtgtttaggtgttttttttcttctcttgaggcaattaacatttctttgacttcataagcaattcatgtcttctatgttaatgcagGGTCTTAAGGAGATTGCAGGCAGTATAATATCTGAAAATTCCAGATCTTCAAATGGTATCGTGCAAGATGGTGTTGATAAATTGGATGATCAGCCAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- -gggttga
- - - - - -gatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtc