Sequence
atgc intronic sequence ATGC exonic sequence...agcaagatatcttacctggtttaatgtggtcattttccttaaaactatcaattatgattcctggtgcaaagcgctttacataaagtttgctatgttttagGTCCTCTTCCAAAATGATTCACCAGCGACGTTACTTGCACGGGTGATTGGAATAATAGGTTCAATTGACCAAGGCATGCTTGCTAAAGGACGTGATACAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA16G34510.1 (Glycine max), 3'ss of exon 5
--agcaagat-atcttacctggtttaatgtggtcattttccttaaaactatcaattatgattc-ctggtgcaaagcgctttacataaagtttgctatgttttagGTCCTCTTCCAAAATGATTCACCAGCGACGTTACTTGCACGGGTGATTGGAATAATAGGTTCAATTGACCAAGGCATGCTTGCTAAAGGACGTGATACAT
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acattgacttcacctcatctactgaaatact-ttattttctttgttaaatacatgcataattctctcattctta---tgtgacacaagaccatgcattatatagGTCCTCTTCCAAAATGATTCCCCGGCAACATTACTTGCTCGGGTGATTGGTATAATTGGCCCAATTGATCAAGGTTTGCTTGCTAAAGCACGGGATACAT
upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA09G29970.1 (Glycine max), 3'ss of exon 5
agcaagatatcttacctggtttaatgtggtcattttccttaaaactatcaattatgattcctggtgcaaagcgctttacataaa-gtttgctatgttt-tagGTCCTCTTCCAAAATGATTCACCAGCGACGTTACTTGCACGGGTGATTGGAATAATAGGTTCAATTGACCAAGGCATGCTTGCTAAAGGACGTGATACAT
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-tgacttcatctcttctactgatactttattttcttctttgtaaata-cacgcataattctctctttctgatgtgacactcgatcgtgcattatttatgtagGTTCTCTTCCAAAATGATTCCCCTGCGACATTACTTGCTCGGGTGATTGGGATCATTGGCCCAATTGATCAAGGTTTGCTTGCTAAAGGACGGGATACAT
upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA05G33560.1 (Glycine max), 3'ss of exon 5
agcaagatatct-tacctggtttaatgtggtcattttccttaaaactatcaattatga--ttcctggtgcaaagcgctttacataaagtttgctatgttttagGTCCTCTTCCAAAATGATTCACCAGCGACGTTACTTGCACGGGTGATTGGAATAATAGGTTCAATTGACCAAGGCATGCTTGCTAAAGGACGTGATACAT
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---agaatttctctgtattatggagagtgctttcttttctttgttaaatacatgattaattttctatttcttcttcagtggcactgaactaagcattttgtagGTCCTCTTCCAAAATGATTCACCTGCAACATTACTTGCTCGGGTGATTGGGATCATTGATCCAATTGATCAAAGTATGCTTGCAAAAGGACGCGACACAT
upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA08G06160.1 (Glycine max), 3'ss of exon 7
agcaagatatct-tacctggtttaatgtggtcattttccttaaaactatcaattatgattcctggtgcaaagcgctttacataaagtttgctatgttttagGTCCTCTTCCAAAATGATTCACCAGCGACGTTACTTGCACGGGTGATTGGAATAATAGGTTCAATTGACCAAGGCATGCTTGCTAAAGGACGTGATACAT
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-gtagaatctctgtattatggagagtgctttcttttctttgttaaatacatgattaattttttatttcttcttcagtggcactgaactaagcattttgtagGTCCTCTTCCAAAATGATTCACCTGCAACATTACTTGCTCGGGTGATTGGGATCATTGGTCCAATTGATCAAAATATGCTTGCAAAAGGACGGGACACAT
upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT3G17750.1 (Arabidopsis thaliana), 3'ss of exon 6
agcaagatatcttacctggtttaatgtggtcattttccttaaaactatcaattatgattcctggtgcaaagcgctttacataaagtttgc-tatgtttt---agGTCCTCTTCCAAAATGATTCACCAGCGACGTTACTTGCACGGGTGATTGGAATAATAGGTTCAATTGACCAAGGCATGCTTGCTAAAGGACGTGATACAT
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-gtaagtt--ccagcatcgatgataccagttaaaagctttataattatataatccactaagctagctaggaccctata-atgtaacttgcgtctgcttttgcagGTTCTTTTCCAAAATGATTCTCCGGCTACTTTACTTGCAAGGGTCATCGGTATAATCGGATCAATTGACCAAGAAATGCTTGCCAAAGGACGTGATACAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatcaattatgattcctggtgcaaagcgctttacataaagtttgctatgttttagGTCCTCTTCCAAAATGATTCACCAGCGACGTTACTTGCACGGGTGATTGGAATAATAGGTTCAATTGACCAAGGCATGCTTGCTAAAGGACGTGATACAT
tttacataaagttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agcaagatatcttacctggtttaatgtggtcattttccttaaaactatcaattatgattcctggtgcaaagcgctttacataaagtttgctatgttttagGTCCTCTTCCAAAATGATTCACCAGCGACGTTACTTGCACGGGTGATTGGAATAATAGGTTCAATTGACCAAGGCATGCTTGCTAAAGGACGTGATACAT
- - - - - - tacctgg
- - - - - - - - - - - - - - - - - - - - aaaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acataaa