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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattcttttgcactttaggacctttcccatgtattatttgaccacattatgctcttacgttatgattctgacttgtccatgtgcagGTGAAGGAGCACTTGAAAAATGGGAAGAATGTGTCAATGGGTTTTGGTTTTATAGAGTTTGATTCAGTTGAGACAGCAGTCAATGTTTGCAGCAATTTAC

Basic information

species Vitis vinifera
transcript Vv01s0011g01060.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g01060.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA13G09970.1 (Glycine max), 3'ss of exon 12
------gtaat-tcttttgcactttaggacctttcccatgtattatttgaccacattatg--ctcttacgttatgattctgacttgtccatgtgcagGTGAAGGAGCACTTGAAAAATGGGAAGAATGTGTCAATGGGTTTTGGTTTTATAGAGTTTGATTCAGTTGAGACAGCAGTCAATGTTTGCAGCAATTTAC
      ||  | | | |  | ||||| ||| ||  | || | | || |       || |    |||    || || || ||     | ||     |||||||| |||| |||||||||||||| ||||| || ||||| ||||| ||| | |||||||| ||   ||| || ||    ||||||||||   ||||||
gtattggttttatttctaactctttatgac-ttggctatatttcatatttttgttttgttgcttctcttattttggttttgttgctttcacaaatagGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTGTTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAAAGATTTAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattatttgaccacattatgctcttacgttatgattctgacttgtccatgtgcagGTGAAGGAGCACTTGAAAAATGGGAAGAATGTGTCAATGGGTTTTGGTTTTATAGAGTTTGATTCAGTTGAGACAGCAGTCAATGTTTGCAGCAATTTAC
                                  ttctgac  putative branch site (score: 2)
                                        cttgtcc  CT-rich tract
                            ttatgatt  TA-rich tract