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gtatcagattatatcttgcctcttgatctgatttccaatgtgacgaacttgcatgatctaaaataatataattacaatacaatgattgaaattgtcacaacatgtccattaataaggtagtagatcccaactgaggaaagaattataactattaatgtttgtttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAATAAGAAAGAGGCCAAATTCTATGGCAACATGTTTGCAAGGATGAACAAG
species | Vitis vinifera |
transcript | Vv00s0769g00010.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAAEST: gi|46910462|gb|CN545837.1|CN545837
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAAEST: gi|351052096|gb|FQ455389.1|FQ455389
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAAEST: gi|351030826|gb|FQ438862.1|FQ438862
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAAEST: gi|32245865|gb|CD711684.1|CD711684
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAAEST: gi|33403350|gb|CF208977.1|CF208977
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGEST: gi|30253340|gb|CB970891.1|CB970891
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGG
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGGTGTAAAGCTGGAGTATAGAACTTEST: gi|110690586|gb|EE067825.1|EE067825
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTT
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAAEST: gi|30130409|gb|CB915748.1|CB915748
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAAEST: gi|30129057|gb|CB914396.1|CB914396
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAAEST: gi|352790570|gb|FQ478209.1|FQ478209
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAAEST: gi|110423083|gb|EC989419.1|EC989419
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAAEST: gi|83275789|gb|DV939797.1|DV939797
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGGAAAAATGAAGGAGTACAAEST: gi|110423297|gb|EC989639.1|EC989639
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAAEST: gi|110425665|gb|EC992054.1|EC992054
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTTAAGGAAAAAATGAAGGAGTACAAEST: gi|30136452|gb|CB921790.1|CB921790
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAAEST: gi|30134437|gb|CB919775.1|CB919775
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAAEST: gi|32245426|gb|CD711245.1|CD711245
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTCCAAEST: gi|30132983|gb|CB918322.1|CB918322
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTCCAAEST: gi|22011028|gb|BQ796062.1|BQ796062
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAAEST: gi|27582480|gb|CB005175.1|CB005175
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAAEST: gi|110714352|gb|EE091161.1|EE091161
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAAEST: gi|349830992|gb|FQ418276.1|FQ418276
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAAEST: gi|349830215|gb|FQ420475.1|FQ420475
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAAEST: gi|349829935|gb|FQ422248.1|FQ422248
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAAEST: gi|110400903|gb|EC967488.1|EC967488
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAAEST: gi|32249958|gb|CD715777.1|CD715777
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAAEST: gi|110689806|gb|EE066352.1|EE066352
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACNAEST: gi|110377095|gb|EC942156.1|EC942156
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
EST: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAG GGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
genomic: TTGGCCGAGTTTGATATTAAGAAAGCTCTTGAAATTGACCCTGATAACAGgtatcagatt ... tttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAA
gtagtagatcccaactgaggaaagaattataactattaatgtttgtttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAATAAGAAAGAGGCCAAATTCTATGGCAACATGTTTGCAAGGATGAACAAG
tattaat putative branch site (score: 2)
tttgttt CT-rich tract
aaagaattataactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcagattatatcttgcctcttgatctgatttccaatgtgacgaacttgcatgatctaaaataatataattacaatacaatgattgaaattgtcacaacatgtccattaataaggtagtagatcccaactgaggaaagaattataactattaatgtttgtttaaaacagGGATGTAAAGCTGGAGTATAGAACTTTAAAGGAAAAAATGAAGGAGTACAATAAGAAAGAGGCCAAATTCTATGGCAACATGTTTGCAAGGATGAACAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG