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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgctcttctcaattgcagtcttttaagatatataacctttcatttttctggaaggtcatcctttatgacatctggtcagctaatttatatgcacttcagGATCCAGCTGTGACTGACATTGCTTGTGCTGCGCTTAATGGCTTGAAAATGGGTGATAAGACTCTTACAGTGCGTCGTGCCACAGTTGG

Basic information

species Vitis vinifera
transcript Vv00s0561g00030.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0611g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S79_75V6.1 (Physcomitrella patens), 3'ss of exon 12
ttgctcttctcaattgcagtcttttaagatatataacctttcatttttctggaaggtcatcctttatgacatctggtc--agctaatttatatgcacttcagGATCCAGCTGTGACTGACATTGCTTGTGCTGCGCTTAATGGCTTGAAAATGGGTGATAAGACTCTTACAGTGCGTCGTGCCACAGTTGG
  |   |       |  ||   ||| || | | |     | ||  |   |      | ||  |   |||  | || |   ||  || || | |  |   |||||||||||||| || ||| |||||   ||||| |||||||| |||||||||||||| |||||| | |  |||||||||||  | | | |
-ggaagtatatggatttagaggtttgaggtttctgcatatccacatggtttcttc-tgattttggttgagctttgatttgagacaaattgtttatatcacagGATCCAGCTGTTACAGACGTTGCTATAGCTGCACTTAATGGATTGAAAATGGGTGACAAGACTTTAAGCGTGCGTCGTGCTTCTGCTAG

upper sequence: Vv00s0611g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S58_254V6.1 (Physcomitrella patens), 3'ss of exon 13
ttgctcttctcaattgcagtcttttaagatatataacctttcatttttctggaaggtcatcctttatgacatctggtcagctaat--ttatatgcacttcagGATCCAGCTGTGACTGACATTGCTTGTGCTGCGCTTAATGGCTTGAAAATGGGTGATAAGACTCTTACAGTGCGTCGTGCCACAGTTGG
  |       | ||   | ||||| ||| |   | |      |   |    || | | ||| |   | || | ||  | |  ||   | || |      |||||||||||||| || ||  |||||  |||||| |||||||| |||||||||||||| |||||| | |  |||||||||||  | |   |
gagagtagagcgatgataatctttgaagtttcttcaaagccgaagctat--gatgctgatcttggttaacctgtgagctgtgaaaaatcatttatctcgcagGATCCAGCTGTTACAGATGTTGCTATTGCTGCACTTAATGGGTTGAAAATGGGTGACAAGACTTTAAGCGTGCGTCGTGCTTCTGCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctggaaggtcatcctttatgacatctggtcagctaatttatatgcacttcagGATCCAGCTGTGACTGACATTGCTTGTGCTGCGCTTAATGGCTTGAAAATGGGTGATAAGACTCTTACAGTGCGTCGTGCCACAGTTGG
                                 agctaat  putative branch site (score: 3)
                                    taatttatat  TA-rich tract