Sequence
atgc intronic sequence ATGC exonic sequencegttagaattctgaaatataactcttatgctggattcttttcttgatataattgccaactataaattcactgtctcttttatgaaaatgtctatttcagGCATCAGCAAAGAAAGCAAAAGATTTCTTGCCATTTCTGCAAAGGGTTAGGAGGATGCCTGCCATTGTGGAATATGTCCTCAGTGGTCACCGCTTTAAAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0283g00020.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA08G00910.1 (Glycine max), 3'ss of exon 11
gttagaattctgaaatataactcttatgctggattcttttcttgatataattgccaactataaattcactgtctcttttatgaaaatgtctatttcagGCATCAGCAAAGAAAGCAAAAGATTTCTTGCCATTTCTGCAAAGGGTTAGGAGGATGCCTGCCATTGTGGAATATGTCCTCAGTGGTCACCGCTTTAAAC
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-----------gtgagaaaaatgtta-attgtactatttaacttttactctgaaacattcttaaatcttttccccacttttga-----ttcattttagGCATCAGCAAAGAAAGCCAAAGATTTCTTGCCTTTCCTTCACCGAAGTAGAAAAATCCCTGCTGTTGTGGAATATGTCCTTGGTGGCCATCGCTTTAAAT
upper sequence: Vv00s0283g00020.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA05G33320.1 (Glycine max), 3'ss of exon 11
gttagaattctgaaatataactcttatgctggattcttttcttgatataattgccaactataaattcactgtctcttttatgaaaatgtctatttcagGCATCAGCAAAGAAAGCAAAAGATTTCTTGCCATTTCTGCAAAGGGTTAGGAGGATGCCTGCCATTGTGGAATATGTCCTCAGTGGTCACCGCTTTAAAC
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-------gtgagaaaaatgttaattgtactaaattcaacttttactctga--aacattcttaatcttttccccacttttg-------attcattttagGCATCAGCAAAGAAAGCCAAGGATTTCTTGCCTTTCCTTCACCGAAGTAGAAAAATCCCTGCAGTTGTGGAATATGTCCTTAGTGGCCATCGTTTTAAAT
upper sequence: Vv00s0283g00020.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT5G07350.1 (Arabidopsis thaliana), 3'ss of exon 11
gttagaattctgaaatata-actcttatg-ctggattcttttcttgatataattgccaactataaattcactgtctctttta---tgaaa----atgtctatttcagGCATCAGCAAAGAAAGCAAAAGATTTCTTGCCATTTCTGCAAAGGGTTAGGAGGATGCCTGCCATTGTGGAATATGTCCTCAGTGGTCACCGCTTTAAAC
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gttagtatatatatatatatatatatatatctccatgtacataataaacgcattttcctcattaacctttttgactaatctaatgtgtaaccatatatttgtctcagTCGGCAGCTAAGAAAGCTAAAGATTTCCTGCCATCCCTGCAAAGAATCAGGAGAATACCCGCTGTTGTGGAATATGTCCTCAGCGGACATCGGTTTAAGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatataattgccaactataaattcactgtctcttttatgaaaatgtctatttcagGCATCAGCAAAGAAAGCAAAAGATTTCTTGCCATTTCTGCAAAGGGTTAGGAGGATGCCTGCCATTGTGGAATATGTCCTCAGTGGTCACCGCTTTAAAC
tcttgat putative branch site (score: 4)
tctatttc putative PPT
tcttttatgaaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagaattctgaaatataactcttatgctggattcttttcttgatataattgccaactataaattcactgtctcttttatgaaaatgtctatttcagGCATCAGCAAAGAAAGCAAAAGATTTCTTGCCATTTCTGCAAAGGGTTAGGAGGATGCCTGCCATTGTGGAATATGTCCTCAGTGGTCACCGCTTTAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG