1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gtttacagtttcctgttcatgactttgttcccaattggattgctttacgattacacatgttcagatatgacattaaaagggttttattttgatcctacagGATAGTGTTAACAACTGGAGAGAGACTGCTCTTATTCTAACATCTATACTATTTCTAGCAGCTGGAATATGGTTCATAG
species | Vitis vinifera |
transcript | Vv00s0282g00040.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTCACATTTTTGGTGATGTTCCTTCCTCACCACTTGTTGGGGTTCTCCAG GATAGTGTTAACAACTGGAGAGAGACTGCTCTTATTCTAACATCTATACTAEST: gi|110376483|gb|EC941548.1|EC941548
genomic: TTCACATTTTTGGTGATGTTCCTTCCTCACCACTTGTTGGGGTTCTCCAGgtttgccttt ... gatcctacagGATAGTGTTAACAACTGGAGAGAGACTGCTCTTATTCTAACATCTATACTA
EST: TTCACATTTTTGGTGATGTTCCTTCCTCACCACTTGTTGGGGTTCTCCAG GATAGTGTTAACAACTGGAGAGAGACTGCTCTTATTCTAACATCTATACTAEST: gi|32460991|gb|CD802165.1|CD802165
genomic: TTCACATTTTTGGTGATGTTCCTTCCTCACCACTTGTTGGGGTTCTCCAGgtttgccttt ... gatcctacagGATAGTGTTAACAACTGGAGAGAGACTGCTCTTATTCTAACATCTATACTA
EST: TTCACATTTTTGGTGATGTTCCTTCCTCACCACTTGTTGGGGTTCTCCAG GATAGTGTCAACAACTGGAGAGAGACTGCTCTTATTCTAACATCTATACTA
genomic: TTCACATTTTTGGTGATGTTCCTTCCTCACCACTTGTTGGGGTTCTCCAGgtttgccttt ... gatcctacagGATAGTGTTAACAACTGGAGAGAGACTGCTCTTATTCTAACATCTATACTA
tacgattacacatgttcagatatgacattaaaagggttttattttgatcctacagGATAGTGTTAACAACTGGAGAGAGACTGCTCTTATTCTAACATCTATACTATTTCTAGCAGCTGGAATATGGTTCATAG
ttttgat putative branch site (score: 4)
atatgacattaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttacagtttcctgttcatgactttgttcccaattggattgctttacgattacacatgttcagatatgacattaaaagggttttattttgatcctacagGATAGTGTTAACAACTGGAGAGAGACTGCTCTTATTCTAACATCTATACTATTTCTAGCAGCTGGAATATGGTTCATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - -ttcctgt
- - - - - - - - tcatgac
- - - - - - - - - - - - - -ttcccaa
- - - - - - - - - - - - - - - - - -tggattg
- - - - - - - - - - - - - - - - - - - - - - - - - - acacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attaaaa