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...tgttgtttaccttttttgttgttgtgtgtatggtttgatgttggttctacgcagttttatcttctctcttttttattaaaatagtgatttcatgtattagGTTTTCAAAGATGGAGATGGTTCTAAGGCAGCGTGGTTCTCGGCAAATGTATTGAGTTTGAAGGATCAAAAAGCTTATGTGTGTTACGTGGAACTTCCAT
species | Vitis vinifera |
transcript | Vv00s0229g00110.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CAACAGAAAATTTGAAAGAGAACAGCATCAAGGAGGGCTCCCTTGTAGAG GTTTTCAAAGATGGAGATGGTTCTAAGGCAGCGTGGTTCTCGGCAAATGTAEST: gi|30297186|gb|CB973980.1|CB973980
genomic: CAACAGAAAATTTGAAAGAGAACAGCATCAAGGAGGGCTCCCTTGTAGAGgtttgtaact ... catgtattagGTTTTCAAAGATGGAGATGGTTCTAAGGCAGCGTGGTTCTCGGCAAATGTA
EST: CAACAGAAAATTTGAAAGAGAACAGCATCAAGGAGGGCTCCCTTGTAGAG GTTTTCAAAGATGGAGATGGTTCTAAGGCAGCGTGGTTCTCGGCAAATGTAEST: gi|34542799|gb|CF511031.1|CF511031
genomic: CAACAGAAAATTTGAAAGAGAACAGCATCAAGGAGGGCTCCCTTGTAGAGgtttgtaact ... catgtattagGTTTTCAAAGATGGAGATGGTTCTAAGGCAGCGTGGTTCTCGGCAAATGTA
EST: CAACAGAAAATTTGAAAGAGAACAGCATCAAGGAGGGCTCCCTTGTAGAG GTTTTCAAAGATGGAGATGGTTCTAAGGCAGCGTGGTTCTCGGCAAATGTAEST: gi|34542883|gb|CF511115.1|CF511115
genomic: CAACAGAAAATTTGAAAGAGAACAGCATCAAGGAGGGCTCCCTTGTAGAGgtttgtaact ... catgtattagGTTTTCAAAGATGGAGATGGTTCTAAGGCAGCGTGGTTCTCGGCAAATGTA
EST: CAACAGAAAATTTGAAAGAGAACAGCATCAAGGAGGGCTCCCTTGTAGAG GTTTTCAAAGATGGAGATGGTTCTAAGGCAGCGTGGTTCTCGGCAAATGTAEST: gi|110713658|gb|EE089772.1|EE089772
genomic: CAACAGAAAATTTGAAAGAGAACAGCATCAAGGAGGGCTCCCTTGTAGAGgtttgtaact ... catgtattagGTTTTCAAAGATGGAGATGGTTCTAAGGCAGCGTGGTTCTCGGCAAATGTA
EST: CAACAGAAAATTTGAAAGAGAACAGCATCAAGGAGGGCTCCCTTGTAGAG GTTTTCAAAGATGGAGATGGTTCTAAGGCAGCGTGGTTCTCGGCAAATGTA
genomic: CAACAGAAAATTTGAAAGAGAACAGCATCAAGGAGGGCTCCCTTGTAGAGgtttgtaact ... catgtattagGTTTTCAAAGATGGAGATGGTTCTAAGGCAGCGTGGTTCTCGGCAAATGTA
tctacgcagttttatcttctctcttttttattaaaatagtgatttcatgtattagGTTTTCAAAGATGGAGATGGTTCTAAGGCAGCGTGGTTCTCGGCAAATGTATTGAGTTTGAAGGATCAAAAAGCTTATGTGTGTTACGTGGAACTTCCAT
ttttttattaaaatag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttgtttaccttttttgttgttgtgtgtatggtttgatgttggttctacgcagttttatcttctctcttttttattaaaatagtgatttcatgtattagGTTTTCAAAGATGGAGATGGTTCTAAGGCAGCGTGGTTCTCGGCAAATGTATTGAGTTTGAAGGATCAAAAAGCTTATGTGTGTTACGTGGAACTTCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - -tgttgtg
- - - - - - - - - - - - - tgtatgg
- - - - - - - - - - - - - - - - - - - tgttggt
- - - - - - - - - - - - - - - - - - - - - - - ctacgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatag