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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggctgtctgctttccttttttgtgtttttggatctttccttctttattctgaggagatcttgttcattttgaatgaaaattaacaaatgcacagGGGACAAGATGTGCTTCTTTTGAACACTGGATTGGGGAATGATGAAGAACAAAAAAATATTGAACAACTTCTTCGCATTGAGACACCTGGTTCAATGGAT

Basic information

species Vitis vinifera
transcript Vv00s0227g00060.t01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33404514|gb|CF210141.1|CF210141
EST:     TACGTGGCATGGAATCCTTTGCCCGGGCTTCATATTTTGGCCGTCTCCTC                         GGGACAAGATGTGCTTCTTTTGAACACTGGATTGGGGAATGATGAAGAACN
genomic: TACGTGGCATGGAATCCTTTGCCTGGGCTTCATATTTTGGCCGTCTCCTCgtaaggctgt ... aaatgcacagGGGACAAGATGTGCTTCTTTTGAACACTGGATTGGGGAATGATGAAGAACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttattctgaggagatcttgttcattttgaatgaaaattaacaaatgcacagGGGACAAGATGTGCTTCTTTTGAACACTGGATTGGGGAATGATGAAGAACAAAAAAATATTGAACAACTTCTTCGCATTGAGACACCTGGTTCAATGGAT
                                      aattaac  putative branch site (score: 2)
 attttgaatgaaaatt  TA-rich tract