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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggttatgaggtggcagaacttgttgctgaagaaagatttcataaatttttttatattattcttatattcttaagctttgataaattaatatgatgttccttcatcaatgtgtggggtacaattgattagtcaatattttttactgaaacttttaccaattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG

Basic information

species Vitis vinifera
transcript Vv00s0211g00120.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA09G33480.1 (Glycine max), 3'ss of exon 11
gtatggttatgaggtggcagaacttgttgctgaagaaagatttcataaatttttttatattattcttatattcttaagctttgataaattaatatgatgttccttcatcaatgtgtggggtacaattgattagtcaatattttttactgaaacttttaccaattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG
                           |  |  |||||||  | |  |   | ||   |       || |||        ||| || |  ||   | || || | | | ||||     || |             ||    || || |  |||    || || | ||||| |  |||   ||||||| ||||| ||||||||||||||||||||||| ||| || | || |||||| |||||| ||||
--------------------------gtatttcagaaagaacttagcagcctcttgtcacagaagatagatt--------ttgttacaacaaagggttggtc-tccttgaatgatcaaggaa----------actaacgccttatattctaac----actaaatatgcagGCACTGAGTGAGAAGGGCTATGAGCTTGTTTCTGGTGGAACTGAGAATCATCTACTTTTGGTGAATCTGAAGAGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352781461|gb|FQ468305.1|FQ468305
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|352781319|gb|FQ467765.1|FQ467765
EST:     AGCAAATTTTCTCT-ATTGTTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: AGCAAGTTCTCTCTAATTG-TTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|352768597|gb|FQ467809.1|FQ467809
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|110363542|gb|EC927137.1|EC927137
EST:     TGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: TGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|33407197|gb|CF212824.1|CF212824
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|349827018|gb|FQ419109.1|FQ419109
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|32270628|gb|CD719787.1|CD719787
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATGAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|29785535|gb|CB342622.2|CB342622
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|352780960|gb|FQ466273.1|FQ466273
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTTTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|110361521|gb|EC925002.1|EC925002
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|352763948|gb|FQ465398.1|FQ465398
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|352769305|gb|FQ471454.1|FQ471454
EST:     TCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: TCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|352777762|gb|FQ466815.1|FQ466815
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|110379633|gb|EC944843.1|EC944843
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATGAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|29784993|gb|CB341601.2|CB341601
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|27755145|gb|CB035900.1|CB035900
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|27578509|gb|CB001204.1|CB001204
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|32250249|gb|CD716068.1|CD716068
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|351030429|gb|FQ432367.1|FQ432367
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|352781813|gb|FQ469111.1|FQ469111
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|352780984|gb|FQ466297.1|FQ466297
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|30133417|gb|CB918756.1|CB918756
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|45771466|gb|CN007318.1|CN007318
EST:     CAAAG-TTGCAGAG                         AC-TTGATC-AGAAGGG-TATG-ACTTGTTTCT-GTGGAACTGAGAACCAT
genomic: CAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|110361068|gb|EC924521.1|EC924521
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|351016424|gb|FQ423851.1|FQ423851
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|110373188|gb|EC937406.1|EC937406
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|352777748|gb|FQ466801.1|FQ466801
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|33407112|gb|CF212739.1|CF212739
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|110363609|gb|EC927210.1|EC927210
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|110413717|gb|EC979522.1|EC979522
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACATTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|352781311|gb|FQ467757.1|FQ467757
EST:     GCAAGTTTTCTCTAATTTTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: GCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|351029249|gb|FQ435449.1|FQ435449
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|32246995|gb|CD712814.1|CD712814
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTNTGATGAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|29785493|gb|CB342547.2|CB342547
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|352773661|gb|FQ472443.1|FQ472443
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCATAG                         ACTTTGATCAAGAAGGGTTATGAATTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|352772663|gb|FQ472138.1|FQ472138
EST:     CAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: CAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|351053957|gb|FQ441723.1|FQ441723
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|352772602|gb|FQ472077.1|FQ472077
EST:     TGTTCAAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTTTGGTGGAACTGAGAACCAT
genomic: TGTTC-AAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|29785469|gb|CB342488.2|CB342488
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|30299931|gb|CB976725.1|CB976725
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATGAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: gi|351013925|gb|FQ434077.1|FQ434077
EST:     ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG                         ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggggtacaattgattagtcaatattttttactgaaacttttaccaattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG
        aattgat  putative branch site (score: 4)
        aattgattagtcaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatggttatgaggtggcagaacttgttgctgaagaaagatttcataaatttttttatattattcttatattcttaagctttgataaattaatatgatgttccttcatcaatgtgtggggtacaattgattagtcaatattttttactgaaacttttaccaattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC