1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ttcacactgtttaacaatgctgctctttcccaagaaacagatatctattgtgctcttatagccttttagaaagcattaatagttagctttatttttgtagATTGAGAAGCTGAGTGATAAGCAGTGCCAGCCCGAGTCACAACTCAAGTTCATAACAGAGGCCTGGTTGCAG
species | Vitis vinifera |
transcript | Vv00s0207g00090.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCTAGGCAGAAAGCACTTGCAGACCTACAGCAGATGCAAACTGTAAAT ATTGAGAAGCTGAGTGATAAGCAGTGCCAGCCCGAGTCACAACTCAAGTTCEST: gi|37183601|gb|CF602955.1|CF602955
genomic: TCTAGGCAGAAAGCACTTGCAGACCTACAGCAGATGCAAACTGTAAATgtaagcaaca ... atttttgtagATTGAGAAGCTGAGTGATAAGCAGTGCCAGCCCGAGTCACAACTCAAGTTC
EST: TCTAGGCAGAAAGCACTTGCAGACCTACAGCAGATGCAAACTGTAAAT ATTGAGAAGCTGAGTGATAAGCAGTGCCAGCCCGAGTCACAACTCAAGTTCEST: gi|110696137|gb|EE074954.1|EE074954
genomic: TCTAGGCAGAAAGCACTTGCAGACCTACAGCAGATGCAAACTGTAAATgtaagcaaca ... atttttgtagATTGAGAAGCTGAGTGATAAGCAGTGCCAGCCCGAGTCACAACTCAAGTTC
EST: TCTAGGCAGAAAGCACTTGCAGACCTACAGCAGATGCAAACTGTAAAT ATTGAGAAGCTGAGTGATAAGCAGTGCCAGCCCGAGTCACAACTCAAGTTC
genomic: TCTAGGCAGAAAGCACTTGCAGACCTACAGCAGATGCAAACTGTAAATgtaagcaaca ... atttttgtagATTGAGAAGCTGAGTGATAAGCAGTGCCAGCCCGAGTCACAACTCAAGTTC
tattgtgctcttatagccttttagaaagcattaatagttagctttatttttgtagATTGAGAAGCTGAGTGATAAGCAGTGCCAGCCCGAGTCACAACTCAAGTTCATAACAGAGGCCTGGTTGCAG
cattaat putative branch site (score: 3)
ctttattttt putative PPT
attaatagttagcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcacactgtttaacaatgctgctctttcccaagaaacagatatctattgtgctcttatagccttttagaaagcattaatagttagctttatttttgtagATTGAGAAGCTGAGTGATAAGCAGTGCCAGCCCGAGTCACAACTCAAGTTCATAACAGAGGCCTGGTTGCAG
- cacactg
- - - - - - - caatgct
- - - - - - - - - - - - ctttccc
- - - - - - - - - - - - - - - - -gaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagca