Sequence
atgc intronic sequence ATGC exonic sequence...taaaaacactttttagaatcactaccaaacacactcttaatgtttttctacaagaaactattgaaatgatactgatatttattcaatcattatgtaccagACAAAGAAATATTTTAAAGCAACTGGCAATCCAGCTGATGTCAAGTATATAGATCCAACGTACATGATTCGTGCATGCCGTGCAAATGCATCAGATGGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA01G03040.1 (Glycine max), 3'ss of exon 11
-taaaaacactttttagaatcactaccaaacacactcttaatgtttttctacaag-aaactattgaaatgatactgatatttattcaatcattatgtaccagACAAAGAAATATTTTAAAGCAACTGGCAATCCAGCTGATGTCAAGTATATAGATCCAACGTACATGATTCGTGCATGCCGTGCAAATGCATCAGATGGAA
| | | ||| | || | | | || | | ||| || ||| | || |||| | | || ||| | | | ||||| || ||||| || || | || ||| || ||||| || || ||||| ||||||||||||||||| |||||||| || |||||||| || |||||||
ctttgagtatggtttctgttgcatattc--tataatgcagatatctgtcttcatttaaattttttaaatcagtgtttcatgccaacaactgctttatttcagACGAAAAAATACTTCAAGGAAATTGGTGTTCATGCTGACGTTAAATATATCGATCCAACGTACATGATCCGTGCATGTCGAGCAAATGCTTCTGATGGAA
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA08G38450.1 (Glycine max), 3'ss of exon 10
-taaaaacactttttagaatcactaccaaacacactcttaatgtttttctacaagaaactattgaaatgatactgatatttattcaatcattatgtaccagACAAAGAAATATTTTAAAGCAACTGGCAATCCAGCTGATGTCAAGTATATAGATCCAACGTACATGATTCGTGCATGCCGTGCAAATGCATCAGATGGAA
| || | | | || || | | || | | ||| | || |||| | | ||| ||| | || | |||||||| |||||||| || | | ||| || |||||||| || ||||| ||||||||||| ||||| |||||| || |||||||||||||||||||
gtgaacaaatatatt-gagttcttttgtaatgtagatagcttcctttatttagagtttttattttaccacatattttatgctgacaactgtcatattgcagACAAAAAAATATTTCAAGGAGATTGGTGTTCATGCTGATGTGAAATATATTGATCCAACGTATATGATCCGTGCAATTCGAGCAAATGCATCAGATGGAA
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA18G21720.1 (Glycine max), 3'ss of exon 12
taaaaacactttttagaatcactaccaaacacactcttaatgtttttctacaagaaactattgaaatgatactgatatttattc----aatcattatgtaccagACAAAGAAATATTTTAAAGCAACTGGCAATCCAGCTGATGTCAAGTATATAGATCCAACGTACATGATTCGTGCATGCCGTGCAAATGCATCAGATGGAA
| ||| ||||| | | || | | | | | | | | | || | || | || || ||||| | || ||||| | ||||| || |||||||| || | | ||| || |||||||| || ||||| |||||||| || ||||| |||||| || |||||||||||||||||||
--accacatattttatgctgaaaactat-tatattgcagacctgtcttcatttagaatttttattttaccacatat-tttatgctgaaaactattatattgcagACCAAAAAATATTTCAAGGAGATTGGTGTTCATGCTGATGTGAAATATATTGATCCAACTTATATGATCCGTGCAATTCGAGCAAATGCATCAGATGGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctacaagaaactattgaaatgatactgatatttattcaatcattatgtaccagACAAAGAAATATTTTAAAGCAACTGGCAATCCAGCTGATGTCAAGTATATAGATCCAACGTACATGATTCGTGCATGCCGTGCAAATGCATCAGATGGAA
tactgat putative branch site (score: 2)
atatttattcaatcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taaaaacactttttagaatcactaccaaacacactcttaatgtttttctacaagaaactattgaaatgatactgatatttattcaatcattatgtaccagACAAAGAAATATTTTAAAGCAACTGGCAATCCAGCTGATGTCAAGTATATAGATCCAACGTACATGATTCGTGCATGCCGTGCAAATGCATCAGATGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
-aaaaaca
- - - - - - - agaatca
- - - - - - - - - - - - ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - - -acaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaatca