Sequence
atgc intronic sequence ATGC exonic sequence...tttcaattcttattgacttgttctttgttaatttacctttataatttactgttaaggttgtctagtgagccattttgttttgcaatgtttgtttgatcagGTAGAGTATATATTTTCTGACAAAACTGGAACCCTAACAAGGAATTTAATGGAGTTCTTTAAGTGTTCAATTGGGGGAGAGGTCTATGGAACTGGTATTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0189g00030.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G326677_T01 (Zea mays), 3'ss of exon 16
tttcaattcttattgacttgtt--ctttgttaatttacctttataa-tttactgttaaggttgtctagtgagccattttgttttgcaatgtttgtttgatcagGTAGAGTATATATTTTCTGACAAAACTGGAACCCTAACAAGGAATTTAATGGAGTTCTTTAAGTGTTCAATTGGGGGAGAGGTCTATGGAACTGGTATTA
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---gaatgcttgagatcttgtcagattttgaagattacagatataaacgttttgtacatttcgccttactttagatttaactcatcatcaacattattgttagGTTGAATATATATTTTCTGACAAAACTGGCACACTTACAAGAAATCTGATGGAATTCTTTAAATGCTCAATTGGTGGAGAAATGTATGGAACTGGCATCA
upper sequence: Vv00s0189g00030.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA18G16990.1 (Glycine max), 3'ss of exon 5
-----------------------------------------------------------------------------------tttcaattcttattgacttgttctttgttaatttacctttataatttactgttaaggttgtctagtgagccattttgttttgcaatgtttgtttgatcagGTAGAGTATATATTTTCTGACAAAACTGGAACCCTAACAAGGAATTTAATGGAGTTCTTTAAGTGTTCAATTGGGGGAGAGGTCTATGGAACTGGTATTA
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gtaagttgctgcctcatttattgcttgaaagaaaaacaattattaccgatgacaatgagaaaggaagaaagtgaaagagagagtacaaactatgctcgaaatgggaatgattttttttttttttaaaaataaaagaaacaat-tttaac------ttcaattctacatt-ctgatttgagtagGTGGAATACATTTTCTCTGACAAAACTGGGACTCTGACAAGAAATTTGATGGAGTTCTTTAAGTGTTCAATTGGAGGAGAGGTCTATGGAAATGGTGTGA
upper sequence: Vv00s0189g00030.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA08G40530.1 (Glycine max), 3'ss of exon 13
-----------------------------------------------------------------tttcaattcttattgact-tgttctttgtt---aatttacctttataatttactgttaaggttgtctagtgagccattttgttttgcaatgtttgtttgatcagGTAGAGTATATATTTTCTGACAAAACTGGAACCCTAACAAGGAATTTAATGGAGTTCTTTAAGTGTTCAATTGGGGGAGAGGTCTATGGAACTGGTATTA
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gtaaattgctgcctcatttttttgcttgaaagaaaaacaattattactgatggcgatgggaaaggaagaaagtgaaagagagtataaactatgctcaaaattggaatgaaaaaaatttaaataagagaaacaaaattttaactccaattttacattctgatttgagtagGTGGAATACATTTTCTCTGACAAAACTGGGACTCTGACAAGAAATTTGATGGAGTTCTTTAAATGTTCAATTGGAGGAGAGGTCTATGGAAATGGTGTGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttactgttaaggttgtctagtgagccattttgttttgcaatgtttgtttgatcagGTAGAGTATATATTTTCTGACAAAACTGGAACCCTAACAAGGAATTTAATGGAGTTCTTTAAGTGTTCAATTGGGGGAGAGGTCTATGGAACTGGTATTA
tttgttt CT-rich tract
attttgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttcaattcttattgacttgttctttgttaatttacctttataatttactgttaaggttgtctagtgagccattttgttttgcaatgtttgtttgatcagGTAGAGTATATATTTTCTGACAAAACTGGAACCCTAACAAGGAATTTAATGGAGTTCTTTAAGTGTTCAATTGGGGGAGAGGTCTATGGAACTGGTATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - -tgacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgtt