Sequence
atgc intronic sequence ATGC exonic sequence...tgactctggctgatatggcttcagtcattagctgaaaactagcagacttgttgcaaaaagaagtgatccagagagctcaacttgtttacatttgtttcagCTTTCCTATGGCAGTTGATGAGATATAATATGCTCCAGCTCCTAAAGAACTTGAGATTCCACTCCCAAGGGAAAGAGATGACTGATGCTGATATCCTGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g01440.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G382341_T01 (Zea mays), 3'ss of exon 11
-tgactctggctgatatggcttcagtcattagctgaaaactagcagactt----gttgcaaaaagaagtgatccagagagctcaacttgtttacatttgtttcagCTTTCCTATGGCAGTTGATGAGATATAATATGCTCCAGCTCCTAAAGAACTTGAGATTCCACTCCCAAGGGAAAGAGATGACTGATGCTGAT-ATCCTGAA
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gtgagtccgtttgcatcattttttcctagtggcactaatggatcatgctcttaaattcttgtttgtagca--tcatataacttaagttttatggtgttttttcagCACTTCTGTGGCAATTGATGAGATTCAATATCCTCCAGCTGTTAAACAAACTGAGATTCCACTCCCAAGGGTCCGAAGGAAAAGAAATTTCTGATGCCGA-
upper sequence: Vv19s0090g01440.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G010937_T01 (Zea mays), 3'ss of exon 11
-tgactctggctgatatggcttcagtcattagctgaaaactagcagacttgttgcaaaaagaagtgatc--cagagagctcaacttgttta-catttgtttcagCTTTCCTATGGCAGTTGATGAGATATAATATGCTCCAGCTCCTAAAGAACTTGAGATTCCACTCCCAAGGGAAAGAGATGACTGATGCTGATATCCTGAA--
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gtgagtctggctgcgtcaatttttgctagtggcacggatc----atgctcttaatatcttgtttttatcatcatataactcaagttttctggtgtttttttcagCACTTCTGTGGCAATTGATGAGATTCAATATCCTCCAGCTGTTAAACAAACTGAGATTCCACTCCCAAGG--AGGGTCCCAAGGAAAAGAAATTTCTGATGC
upper sequence: Vv19s0090g01440.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G556845_T01 (Zea mays), 3'ss of exon 10
--------------------------------------------------tgactctggctgatatggcttcagtcattagctgaaaactagcagacttgttgcaaaaagaagtgatccagagagctcaacttgtttacatttgtttc-agCTTTCCTATGGCAGTTGATGAGATATAATATGCTCCAGCTCCTAAAGAACTTGAGATTCCACTCCCAAGGGAAAGAGATGACTGATGCTGATATCCTGAA
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gtaaatgtgtgcttatatataagcttctttggggatggggcttaaattactttttttgggtgttgggg----gggggggggggggatgttcttaaaattcctacaagaggagaaaaataaaatgcttcattgattttttttttactcccagCTTTCCTGTGGCAACTCATGAGGACTAGTATCCTACAATTGCTGAGGAACTTGAGATCCCACTCTAAAGAGAAAGAGATGACAGATGCTGACATTCTCAT
upper sequence: Vv19s0090g01440.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA08G41810.1 (Glycine max), 3'ss of exon 6
-------------------------------tgactctggctgatatggcttcagtcattagctgaaaactagcagacttgttgcaaaaagaagtgatccagagagctcaacttgttta---catttgtttcagCTTTCCTATGGCAGTTGATGAGATATAATATGCTCCAGCTCCTAAAGAACTTGAGATTCCACTCCCAAGGGAAAGAGATGACTGATGCTGATATCCTGAA
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gtaatgtcttcatctcactataccttccacacaaatgttatggatataatttgcttttttttct-aagacaattatgactgctttcccacctatttgttttggctttcaattttatctaaaatattttttccagCTTTATTGTGGCAGCTCATGCGATTCACAATGCTTCAACTGTTGAAAATTTTGAGATCTGATTCCCAAGGAAAGGAGATCACTGATGCTGATATCCTGAA
upper sequence: Vv19s0090g01440.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA14G02090.1 (Glycine max), 3'ss of exon 11
-------------------------------tgactctggctgatatggcttcagtcattagctgaaaactagcagacttgttgcaaaaagaagtgatccagagagctcaacttgttt----acatttgtttcagCTTTCCTATGGCAGTTGATGAGATATAATATGCTCCAGCTCCTAAAGAACTTGAGATTCCACTCCCAAGGGAAAGAGATGACTGATGCTGATATCCTGAA
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gtaatctcgtcatctcactatagcttccacacaaatgttatggatatgatttgcttttttttctaaattttttatgactgctttcccacctatttgttttggct--ttcaattttatctaaaatatttttttcagCTTTATTGTGGCAGCTCATGCGATTCACAATGCTTCAACTGTTGAAAAATTTGAGATCTCATTCCCAAGGAAAGGAGATCACTGATGCTGATATCCTGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acttgttgcaaaaagaagtgatccagagagctcaacttgtttacatttgtttcagCTTTCCTATGGCAGTTGATGAGATATAATATGCTCCAGCTCCTAAAGAACTTGAGATTCCACTCCCAAGGGAAAGAGATGACTGATGCTGATATCCTGAA
tttgtttc CT-rich tract
tttacattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgactctggctgatatggcttcagtcattagctgaaaactagcagacttgttgcaaaaagaagtgatccagagagctcaacttgtttacatttgtttcagCTTTCCTATGGCAGTTGATGAGATATAATATGCTCCAGCTCCTAAAGAACTTGAGATTCCACTCCCAAGGGAAAGAGATGACTGATGCTGATATCCTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - tggctga
- - - - - - -tatggct
- - - - - - - - - - - - - - - - - aaaacta
- - - - - - - - - - - - - - - - - - - - - - - - tgttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaa