1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tttcaaaattcataatctctctgagattcatacaaacacatgaattagtaccttggatgccctcggaatttaatatttttgaccttccaattgattgcagACTCCATTGAAGTTAAACCTGCTTCCAGCAGATTCCAGAATAACCAGCAAAGAGTACAATGACAGACTTGTTAATGGGGAGGCACACGTATTGGTGGATG
species | Vitis vinifera |
transcript | Vv19s0090g01020.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AATTTCAAGATTTTGACTATGAGAAGTTCACTCAGTCTCCACTATCCACG GCTCCATTGAAGTTAAACCTGCTTTCAGCAGATTCCAGAATAACCAGCAAAEST: gi|122691477|gb|EC978408.1|EC978408
genomic: AATTTCAAGATTTTGACTATGAGAAGTTCACTCGGTCTCCACTATCCACGgtatcatctg ... ttgattgcagACTCCATTGAAGTTAAACCTGCTTCCAGCAGATTCCAGAATAACCAGCAAA
EST: AATTTCAAGATTTTGACTATGAGAAGTTCACTCGGTCTCCACTATCCACG ACTCCATTGAAGTTAAACCTGCTTCCAGCAGATTCCAGAATAACCAGCAAAEST: gi|349832693|gb|FQ422051.1|FQ422051
genomic: AATTTCAAGATTTTGACTATGAGAAGTTCACTCGGTCTCCACTATCCACGgtatcatctg ... ttgattgcagACTCCATTGAAGTTAAACCTGCTTCCAGCAGATTCCAGAATAACCAGCAAA
EST: AATTTCAAGATTTTGACTATGAGAAGTTCACTCAGTCTCCACTATCCACG ACTCCATTGAAGTTAAACCTGCTTCCAGCAGATTCCAGAATAACCAGCAAAEST: gi|349815971|gb|FQ403612.1|FQ403612
genomic: AATTTCAAGATTTTGACTATGAGAAGTTCACTCGGTCTCCACTATCCACGgtatcatctg ... ttgattgcagACTCCATTGAAGTTAAACCTGCTTCCAGCAGATTCCAGAATAACCAGCAAA
EST: AATTTCAAGATTTTGACTATGAGAAGTTCACTCAGTCTCCACTATCCACG GCTCCATTGAAGTTAAACCTGCTTTCAGCAGATTCCAGAATAACCAGCAAAEST: gi|122691527|gb|EC979577.1|EC979577
genomic: AATTTCAAGATTTTGACTATGAGAAGTTCACTCGGTCTCCACTATCCACGgtatcatctg ... ttgattgcagACTCCATTGAAGTTAAACCTGCTTCCAGCAGATTCCAGAATAACCAGCAAA
EST: AATTTCAAGATTTTGACTATGAGAAGTTCACTCGGTCTCCACTATCCACG ACTCCATTGAAGTTAAACCTGCTTCCAGCAGATTCCAGAATAACCAGCAAAEST: gi|349813558|gb|FQ413792.1|FQ413792
genomic: AATTTCAAGATTTTGACTATGAGAAGTTCACTCGGTCTCCACTATCCACGgtatcatctg ... ttgattgcagACTCCATTGAAGTTAAACCTGCTTCCAGCAGATTCCAGAATAACCAGCAAA
EST: AATTTCAAGATTTTGACTATGAGAAGTTCACTCAGTCTCCACTATCCACG GCTCCNTTGAAGTTAAACCTGCTTTCAGCAGATTCCAGAATAACCAGCANAEST: gi|351013602|gb|FQ429743.1|FQ429743
genomic: AATTTCAAGATTTTGACTATGAGAAGTTCACTCGGTCTCCACTATCCACGgtatcatctg ... ttgattgcagACTCCATTGAAGTTAAACCTGCTTCCAGCAGATTCCAGAATAACCAGCAAA
EST: AATTTCAAGATTTTGACTATGAGAAGTTCACTCAGTCTCCACTATCCACG GCTCCATTGAAGTTAAACCTGCTTCCAGCAGATTCCAGAATAACCAGCAAAEST: gi|351020215|gb|FQ445822.1|FQ445822
genomic: AATTTCAAGATTTTGACTATGAGAAGTTCACTCGGTCTCCACTATCCACGgtatcatctg ... ttgattgcagACTCCATTGAAGTTAAACCTGCTTCCAGCAGATTCCAGAATAACCAGCAAA
EST: AATTTCAAGATTTTGACTATGAGAAGTTCACTCAGTCTCCACTATCCACG GCTCCATTGAAGTTAAACCTGCTTCCAGCAGATTCCAGAATAACCAGCAAA
genomic: AATTTCAAGATTTTGACTATGAGAAGTTCACTCGGTCTCCACTATCCACGgtatcatctg ... ttgattgcagACTCCATTGAAGTTAAACCTGCTTCCAGCAGATTCCAGAATAACCAGCAAA
tagtaccttggatgccctcggaatttaatatttttgaccttccaattgattgcagACTCCATTGAAGTTAAACCTGCTTCCAGCAGATTCCAGAATAACCAGCAAAGAGTACAATGACAGACTTGTTAATGGGGAGGCACACGTATTGGTGGATG
aatttaatatttttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcaaaattcataatctctctgagattcatacaaacacatgaattagtaccttggatgccctcggaatttaatatttttgaccttccaattgattgcagACTCCATTGAAGTTAAACCTGCTTCCAGCAGATTCCAGAATAACCAGCAAAGAGTACAATGACAGACTTGTTAATGGGGAGGCACACGTATTGGTGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- tcaaaat
- - - - - - - -tctctct
- - - - - - - - - - - - - - - - caaacac
- - - - - - - - - - - - - - - - - - - - - - - - taccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccctc