1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttgctgtggaatttgaatattcaaagaatctgtgtcttctgtgtccagcatatttggtaatgatgctttcctgtatcatactctatatttttgtttgcagGAAGATCCAACAACGAGGAGGTGGTTGCAGCAGCTGCTTCACAATGTTGGGGGAAGCCGGGTTGCTGCATTTCAGGCGGGGGGAGGATTTGACCATATGC
species | Vitis vinifera |
transcript | Vv19s0090g00930.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATTGCCTTCCGGACATGTTAAAAGACGCCACTTTCAGTAGTTGTCTTCGT GAAGATCCAACAACGAGGAGGTGGTTGCAGCAGCTGCTTCACAATGTTGGGEST: gi|33405642|gb|CF211269.1|CF211269
genomic: ATTGCCTTCCGGACATGTTAAAAGACGCCACTTTCAGTAGTTGTCTTCGTgtaagtattg ... ttgtttgcagGAAGATCCAACAACGAGGAGGTGGTTGCAGCAGCTGCTTCACAATGTTGGG
EST: ATTCCCTTCCGGACATGTTAAAAGACGCCACTTTCAGTAGTTGTCTTCGT GAAGATCCAACAACGAGGAGGTGGTTGCAGCAGCTGCTTCCCAATGTTGGGEST: gi|110391951|gb|EC957020.1|EC957020
genomic: ATTGCCTTCCGGACATGTTAAAAGACGCCACTTTCAGTAGTTGTCTTCGTgtaagtattg ... ttgtttgcagGAAGATCCAACAACGAGGAGGTGGTTGCAGCAGCTGCTTCACAATGTTGGG
EST: ATTGCCTTCCGGACATGTTAAAAGACGCCACTTTCAGTAGTTGTCTTCGT GAAGATCCAACAACGAGGAGGTGGTTGCAGCAGCTGCTTCACAATGTTGGGEST: gi|110730135|gb|EE106867.1|EE106867
genomic: ATTGCCTTCCGGACATGTTAAAAGACGCCACTTTCAGTAGTTGTCTTCGTgtaagtattg ... ttgtttgcagGAAGATCCAACAACGAGGAGGTGGTTGCAGCAGCTGCTTCACAATGTTGGG
EST: ATTGCCTTCCGGACATGTTAAAAGACGCCACTTTCAGTAGTTGTCTTCGT GAAGATCCAACAACGAGGAGGTGGTTGCAGCAGCTGCTTCACAATGTTGGG
genomic: ATTGCCTTCCGGACATGTTAAAAGACGCCACTTTCAGTAGTTGTCTTCGTgtaagtattg ... ttgtttgcagGAAGATCCAACAACGAGGAGGTGGTTGCAGCAGCTGCTTCACAATGTTGGG
cagcatatttggtaatgatgctttcctgtatcatactctatatttttgtttgcagGAAGATCCAACAACGAGGAGGTGGTTGCAGCAGCTGCTTCACAATGTTGGGGGAAGCCGGGTTGCTGCATTTCAGGCGGGGGGAGGATTTGACCATATGC
tttttgttt CT-rich tract
atactctatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgctgtggaatttgaatattcaaagaatctgtgtcttctgtgtccagcatatttggtaatgatgctttcctgtatcatactctatatttttgtttgcagGAAGATCCAACAACGAGGAGGTGGTTGCAGCAGCTGCTTCACAATGTTGGGGGAAGCCGGGTTGCTGCATTTCAGGCGGGGGGAGGATTTGACCATATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
ttgctgt
- - - - - - - - - - -caaagaa
- - - - - - - - - - - - - - - - - -cttctgt
- - - - - - - - - - - - - - - - - - - - - -tccagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catactc