Sequence
atgc intronic sequence ATGC exonic sequencegtttgttattaagtatttgcaacagatgttcaatgtcaatctttgtatagaaatccaaagaaagaatatactattaagatctgattttatggcttttagGTATTGAGATACACATCAGAAAATGTTTTTGTACCATTGACAGTCGGAGGTGGAATTAGAGATTTTACAGATGCAAATGGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g00810.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA18G10460.1 (Glycine max), 3'ss of exon 12
gtttgttattaagtatttgcaacagatgttcaatgtcaatctttgtatagaaat-ccaaagaaagaatatactattaagatctg---attttatggcttttagGTATTGAGATACACATCAGAAAATGTTTTTGTACCATTGACAGTCGGAGGTGGAATTAGAGATTTTACAGATGCAAATGGCAG
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gtttgtgaa-atgtgctaaagtggaagtttttgagttggtgctagtttgtatttgtccgttatctgttgtggtttcaacgttcatactccctatgcttcatagGTATTGCGATACACATCAGAAAATGTTTTTGTACCCTTAACAGTTGGGGGAGGAATTAGAGATTTCACAGATTCAACTGGGAG
upper sequence: Vv19s0090g00810.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA18G12920.1 (Glycine max), 3'ss of exon 12
gtttgttattaagtatttgcaacagatgttcaatgtcaatctttgtatagaaat-ccaaagaaagaatatactattaagatctgat----tttatggcttttagGTATTGAGATACACATCAGAAAATGTTTTTGTACCATTGACAGTCGGAGGTGGAATTAGAGATTTTACAGATGCAAATGGCAG
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gtttgtgaa-atgtgctaaagttggagtttttgagttggtgctagattttatttgtccgttatctgctgtggtttcaacgttttatgctccctatgcttcatagATATTGCGATACACATCAGAAAATGTTTTTGTACCCTTAACAGTTGGGGGAGGAATTAGAGATTTCACAGATTCAACTGGGAG
upper sequence: Vv19s0090g00810.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT4G26900.1 (Arabidopsis thaliana), 3'ss of exon 11
gtttgttattaagtatttgcaacagatgttcaatgtcaatctttgtatagaaatccaaagaaagaatatactattaagatctgattttatggcttttagGTATTGAGATACACATCAGAAAATGTTTTTGTACCATTGACAGTCGGAGGTGGAATTAGAGATTTTACAGATGCAAATGGCAG
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-----gtacctagatttttcattctcagtagaatataagtattacttccaca--ccttccctgtaatttccgatttagatctcttttcatactttatagGTGTTGAGGCAGACATCAAAGAATGTCTTTGTACCACTAACTGTTGGAGGTGGTATTAGAGACTTTACAGATGCTAGTGGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtatagaaatccaaagaaagaatatactattaagatctgattttatggcttttagGTATTGAGATACACATCAGAAAATGTTTTTGTACCATTGACAGTCGGAGGTGGAATTAGAGATTTTACAGATGCAAATGGCAG
atctgat putative branch site (score: 4)
ctttt putative PPT
aaagaaagaatatact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgttattaagtatttgcaacagatgttcaatgtcaatctttgtatagaaatccaaagaaagaatatactattaagatctgattttatggcttttagGTATTGAGATACACATCAGAAAATGTTTTTGTACCATTGACAGTCGGAGGTGGAATTAGAGATTTTACAGATGCAAATGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG