1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...atcaaaagccctggattccatgatttcgcgttgtaatatcttttttggtcccttatttccttaacttttagtcttctaagggctgctttgtgatgtctagGTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGG
species | Vitis vinifera |
transcript | Vv19s0085g00720.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GCATTGCGAGGACAGCAGTTGCTGTTGGAGTGGATGGAATTTTCATGGAG GTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGGEST: gi|110388217|gb|EC952948.1|EC952948
genomic: GCATTGCGAGGACAGCAGTTGCTGTTGGAGTGGATGGAATTTTCATGGAGgtacaaaatc ... tgatgtctagGTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGG
EST: GCATTGCGAGGACAGCAGTTGCTGTTGGAGTGGATGGAATTTTCATGGAG GTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGGEST: gi|30252497|gb|CB970048.1|CB970048
genomic: GCATTGCGAGGACAGCAGTTGCTGTTGGAGTGGATGGAATTTTCATGGAGgtacaaaatc ... tgatgtctagGTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGG
EST: GCATTGCGAGGACAGCAGTTGCTGTTGGAGTGGATGGAATTTTCATGGAG GTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGGEST: gi|110360517|gb|EC923683.1|EC923683
genomic: GCATTGCGAGGACAGCAGTTGCTGTTGGAGTGGATGGAATTTTCATGGAGgtacaaaatc ... tgatgtctagGTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGG
EST: GCATTGCGAGGACAGCAGTTGCTGTTGGAGTGGATGGAATTTTCATGGAG GTGCCCAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGGEST: gi|30128204|gb|CB913543.1|CB913543
genomic: GCATTGCGAGGACAGCAGTTGCTGTTGGAGTGGATGGAATTTTCATGGAGgtacaaaatc ... tgatgtctagGTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGG
EST: GCATTGCGAGGACAGCAGTTGCTGTTGGAGTGGATGGAATTTTCATGGAG GTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGG
genomic: GCATTGCGAGGACAGCAGTTGCTGTTGGAGTGGATGGAATTTTCATGGAGgtacaaaatc ... tgatgtctagGTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGG
tggtcccttatttccttaacttttagtcttctaagggctgctttgtgatgtctagGTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGG
ccttaac putative branch site (score: 3)
ttaactttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcaaaagccctggattccatgatttcgcgttgtaatatcttttttggtcccttatttccttaacttttagtcttctaagggctgctttgtgatgtctagGTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGG
- -aaaagcc
- - - - - - - - -ccatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggctgc