Sequence
atgc intronic sequence ATGC exonic sequence...atttatttgtgttgtactgttggtgccatgatatttgttttgattgtcaacaacaacaatggtttggggtagtttagctacatatgactttctcttatagGCTTGAAATAAGGCAAGTGGGTGAAGGAATACATCATGTGCCTGGACTGGTTGAAGCACATGTGAACAACACGAGCGAGGTCTGGGAAGTTCTACAAACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0027g00080.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os12g42160.1 (Oryza sativa), 3'ss of exon 9
atttatttgtgttgtactgttggtgccatgatatttgttttgattgtcaacaacaacaatggtttggggtagtttagctacatatgactttctcttatagGCTTGAAATAAGGCAAGTGGGTGAAGGAATACATCATGTGCCTGGACTGGTTGAAGCACATGTGAACAACACGAGCGAGGTCTGGGAAGTTCTACAAACT
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----------------------------gtatgtttcttgtgaattctaacagcaacat--gcgagaaccaatatatc---atggcacttcct-tcacagGCTAGAAGTAAGGCAAGTTGCAGAAGGAGTTCATCATGTGCCAGGACTTGTTGAAGCACGTGTTACTAATATGAATGAGGCCTGGGAGGTCCTGCAAACT
upper sequence: Vv19s0027g00080.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA08G18590.1 (Glycine max), 3'ss of exon 11
-------------------------------------------atttatttgtg-ttgtact--gttggtgccatgatatttgttttgattgtcaacaacaacaatggt--ttggggtagtttagctacatatgactttctcttatagGCTTGAAATAAGGCAAGTGGGTGAAGGAATACATCATGTGCCTGGACTGGTTGAAGCACATGTGAACAACACGAGCGAGGTCTGGGAAGTTCTACAAACT
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gtagactaaaaatcggttattttccttctattttcaacctaacagcagcttacaattaaacttggacaaggaaattaaactaaaacttacttttagcttattctatagtaaccgatatagttcactaaaatgtggttat---ttgtagACTTGAAATAAGGCAAGCTGGTGAAGGAATGCATCACATTCCAGGGTTAGTTGAAGCACATGTGAACAATATGACTGAAGTCTGGGAAGTCCTACAAACT
upper sequence: Vv19s0027g00080.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA15G40350.1 (Glycine max), 3'ss of exon 11
----------atttatttgtgttgtactgttggtgcca----tgatatttgttttgattgtcaacaaca-acaatggt--ttggggtagtttagctacatatgactttctcttatagGCTTGAAATAAGGCAAGTGGGTGAAGGAATACATCATGTGCCTGGACTGGTTGAAGCACATGTGAACAACACGAGCGAGGTCTGGGAAGTTCTACAAACT
| ||| ||| || | | | |||| | || | | | | ||| || || |||| | | || || | || ||| ||||| |||||||||| ||||||||||| ||||| | || || ||||||| |||||||||||||| | || || ||||||||||| ||||||||
gtataccacaaattagttggacaaggaaattaaagtgaaacttagtattagcttattctataagtttttcagaatagtaactgatatagtc-actaaaatgtggttaa---ttgtagACTTGAGATAAGGCAAGCTGGTGAAGGAATGCATCACATTCCAGGGTTGGTTGAGGCACATGTGAACAATATGACTGAAGTCTGGGAAGTCCTACAAACC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtcaacaacaacaatggtttggggtagtttagctacatatgactttctcttatagGCTTGAAATAAGGCAAGTGGGTGAAGGAATACATCATGTGCCTGGACTGGTTGAAGCACATGTGAACAACACGAGCGAGGTCTGGGAAGTTCTACAAACT
ctttctcttat CT-rich tract
tagttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atttatttgtgttgtactgttggtgccatgatatttgttttgattgtcaacaacaacaatggtttggggtagtttagctacatatgactttctcttatagGCTTGAAATAAGGCAAGTGGGTGAAGGAATACATCATGTGCCTGGACTGGTTGAAGCACATGTGAACAACACGAGCGAGGTCTGGGAAGTTCTACAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - gttggtg
- - - - - - - - - - - - -ccatgat
- - - - - - - - - - - - - - - - - - - - - - - -caacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtttgg