Sequence
atgc intronic sequence ATGC exonic sequence...gaaaaatgctgttatattttttttttctctatatttctggtacttaattactctattttaaatattttgttattctttatatgatatgtcttgtttgcagATCAGACGGGTTGATCCAACTTTGGACATGGAGGCTGACCAGGGGGATGATTATATGCATCTTCCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g01390.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA20G33940.1 (Glycine max), 3'ss of exon 10
gaaaaatgctgttatattttttttttctctatatttctggtacttaattactctattttaaatattttgt-tattc--tttatatgat-atgtcttgtttgcagATCAGACGGGTTGATCCAACTTTGGACATGGAGGCTGACCAGGGGGATGATTATATGCATCTTCCG
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-----------gtctttgtcttctttctctttaattccgattctcaatgaagatcttttatctgcattctctattccatttatatcattatgtct-gtttgcagGTTCGACGGGTTGATCCAACTTTAGACATGGAAGCAGACCAAGGAGATGATTACACACATCTTCCT
upper sequence: Vv19s0015g01390.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT1G55750.1 (Arabidopsis thaliana), 3'ss of exon 10
-gaaaaatgctgttata-ttttttttttctctatatttctggtacttaattactctattttaaatattttgttattctttatatgatatgtcttgtttgcagATCAGACGGGTTGATCCAACTTTGGACATGGAGGCTGACCAGGGGGATGATTATATGCATCTTCCG
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gttaggtttcttctatggtttaatcatttatcatatattttgtttgaaaagaaaatatttgtggcatatccatctgatttaaatgtcatctct-----gtagATTAGACGGGTTGATCCAACTCTTGACATGGAGGCTGACCAGGGAGACGACTACACTCATCTTATG
upper sequence: Vv19s0015g01390.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT3G61420.1 (Arabidopsis thaliana), 3'ss of exon 10
gaaaaatgctgttatatttttt-ttttctctatatttctggtacttaattactctattttaaatat--tttgttattctttatatgatatgtcttgtttgcagATCAGACGGGTTGATCCAACTTTGGACATGGAGGCTGACCAGGGGGATGATTATATGCATCTTCCG
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-gtcatttcttttttataattaattatttccatgtcatttgcttaaaaggataatgattgtggtctaaccaataaccatttattttaaatgtcatgtttgtagATGAGACGGGTTGATCCAACTCTTGACATGGACGCTGACGAGGGAGATGACTACACCCATCTTATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattactctattttaaatattttgttattctttatatgatatgtcttgtttgcagATCAGACGGGTTGATCCAACTTTGGACATGGAGGCTGACCAGGGGGATGATTATATGCATCTTCCG
acttaat putative branch site (score: 4)
tcttgttt putative PPT
tattttaaatattttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaaaaatgctgttatattttttttttctctatatttctggtacttaattactctattttaaatattttgttattctttatatgatatgtcttgtttgcagATCAGACGGGTTGATCCAACTTTGGACATGGAGGCTGACCAGGGGGATGATTATATGCATCTTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
gaaaaat
- - - - - - - - - - - - - - - - -tttctgg