Sequence
atgc intronic sequence ATGC exonic sequence...atgcatatttcttttattttgttggtacattaaatactgctagcattattcaggtatgcatttttttcaggtaaaagggtgacattctttgttttttcagGTATGTATTTTTGCATATGGTCAGACAGGCTCAGGTAAGACTCATACCATGATGGGCAGGCCAGGAAACCCAGAGCAAAAAGGGTTGATACCTCGCTCTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g05070.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA06G41600.1 (Glycine max), 3'ss of exon 10
------atgcatatttcttttattttgttggtacattaaatactgctagcattattcaggtatgcatttttttcaggtaaaagggtgacattctttgttttttcagGTATGTATTTTTGCATATGGTCAGACAGGCTCAGGTAAGACTCATACCATGATGGGCAGGCCAGGAAACCCAGAGCAAAAAGGGTTGATACCTCGCTCTC
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ttggtgtaggatgttgcttttctagcaaccatgtttctaaatcaatatgtaaaact---gtatacatagatgtatagcaatatgatgatgttttct---tcttcagGTTTGCATCTTTGCCTATGGTCAGACAGGGTCAGGGAAGACCTATACAATGATGGGAAGGCCTGGACATCCAGAGGAGAAGGGCTTGATACCTCGTTCAT
upper sequence: Vv19s0014g05070.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G36230.2 (Glycine max), 3'ss of exon 11
atgcatatttcttttattttgttggtacattaaatactgcta-gcattattcaggtatgc--atttttttcaggtaaaagggtgacatt-------ctttgttttttcagGTATGTATTTTTGCATATGGTCAGACAGGCTCAGGTAAGACTCATACCATGATGGGCAGGCCAGGAAACCCAGAGCAAAAAGGGTTGATACCTCGCTCTC
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----------gatttataatatgcatgcaatacgaatttgtatgcataaattttttacaccaacgattctatgatatatgattgacattttcttttcttttcttttccagGTTTGCATTTTTGCCTATGGTCAGACAGGGTCAGGGAAAACTTACACGATGATGGGCAGGCCTGGACATCCAGGAGAAAAGGGCTTGATCCCTCGTTCAC
upper sequence: Vv19s0014g05070.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA12G16580.1 (Glycine max), 3'ss of exon 11
-------atgcatatttcttttattttgttggtacattaaatactgctagcattattcaggtatgcatttttttcaggtaaaagggtgacattctttgttttttcagGTATGTATTTTTGCATATGGTCAGACAGGCTCAGGTAAGACTCATACCATGATGGGCAGGCCAGGAAACCCAGAGCAAAAAGGGTTGATACCTCGCTCTC
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tttggtgttggatgttgcctttctagcatgaatgt-ttgtaaatcaatatatatact---gtatatattgatgtataataatatggtgatgttttct---tttccagGTTTGCATCTTTGCCTATGGTCAGACAGGGTCAGGGAAAACCTATACAATGATGGGAAGGCCTGGACATCCAGAGGAGAAGGGCTTGATACCTCGTTCAT
upper sequence: Vv19s0014g05070.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA12G34330.1 (Glycine max), 3'ss of exon 10
--atgcatatttcttttattttgt-tggtacattaaatactgctagcattattcaggtatgcatttttttcaggtaaaagggtgacattctttgttttttcagGTATGTATTTTTGCATATGGTCAGACAGGCTCAGGTAAGACTCATACCATGATGGGCAGGCCAGGAAACCCAGAGCAAAAAGGGTTGATACCTCGCTCTC
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aaaggcttttgatttataatatgcatgttttactaacttttgtgcataaatttttaacatcaaggatcctatggaatatgatagacattttct---cttccagGTTTGCATTTTTGCGTATGGTCAGACAGGGTCAGGGAAAACCTATACAATGATGGGAAGGCCTGGACATCCAGAAGAAAAGGGCTTGATTCCTCGTTCAC
upper sequence: Vv19s0014g05070.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT4G27180.1 (Arabidopsis thaliana), 3'ss of exon 11
--------------------------------------------------------------------------------------atgcatatttcttttattt-tgttggtacattaaatactgctagcattattcaggtatgcatttttttcaggtaaaagggtgacattctttgttttttcagGTATGTATTTTTGCATATGGTCAGACAGGCTCAGGTAAGACTCATACCATGATGGGCAGGCCAGGAAACCCAGAGCAAAAAGGGTTGATACCTCGCTCTC
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gtactatctgctttagcttagtttaactccctgtttacttatgtcttcattattcgattcctcaaattttcagagtgtattttggtaaaactgtctaactggtcaataaaagcacatgaatgatgaataatgttatgtttcactgtaccttcttggactaaa--ggttctattacacaatttt-cagGTTTGCATTTTCGCATATGGACAAACAGGATCTGGAAAAACTTATACAATGATGGGTAGGCCAGGAAACCCGGATGAAAAAGGACTGATTCCTCGATGTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttattcaggtatgcatttttttcaggtaaaagggtgacattctttgttttttcagGTATGTATTTTTGCATATGGTCAGACAGGCTCAGGTAAGACTCATACCATGATGGGCAGGCCAGGAAACCCAGAGCAAAAAGGGTTGATACCTCGCTCTC
cattctttgttttttc CT-rich tract
attctttgtttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgcatatttcttttattttgttggtacattaaatactgctagcattattcaggtatgcatttttttcaggtaaaagggtgacattctttgttttttcagGTATGTATTTTTGCATATGGTCAGACAGGCTCAGGTAAGACTCATACCATGATGGGCAGGCCAGGAAACCCAGAGCAAAAAGGGTTGATACCTCGCTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - -tgttggt
- - - - - - - - - - - - - - - - - - - gctagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacattc