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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccattgtcattttgtttcatctttaaaaatatttctgttgactcacttgatgtttgtgatgcagATTGTGCTAAAGGATGAAGCTGACATTGATCCAAATGATCAAACTTCAATTCTTGAACATCTAGACAAAGTG

Basic information

species Vitis vinifera
transcript Vv19s0014g03680.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g03680.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA12G34750.1 (Glycine max), 3'ss of exon 5
--------------------------------------------------------------------------------------gtaagccattgtcattttgtttcatctttaaaaatatttc-----tgttgactcact----tgatgtttgtgatgcagATTGTGCTAAAGGATGAAGCTGACATTGATCCAAATGATCAAACTTCAATTCTTGAACATCTAGACAAAGTG
                                                                                        ||   |||| |  | || || |  ||| ||   ||  |     | || | | |        || ||  | |||||| || | ||||| |||||  | ||||||||||| |||||||||| ||| ||||||||||| ||||||||||||
gtgagccaaaatactaatattatttttttttcctttgtaattattaattacgtacaaaatttacatttctcactgcaatttgaagcaaaatgaattgaccatatggttgacatttgaagccatcccacagttcttcaataatcattaaaatcttcataatgcagGTTATACTAAAAGATGAGCCGGACATTGATCCCAATGATCAAAGTTCTATTCTTGAACACCTAGACAAAGTG

upper sequence: Vv19s0014g03680.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA14G12420.1 (Glycine max), 3'ss of exon 6
-----------------------------------------------------------------------------------------------gtaagccattgtcattttgtttcatctttaaaaatatttctgttgactcacttgatgtttgtgatgcagATTGTGCTAAAGGATGAAGCTGACATTGATCCAAATGATCAAACTTCAATTCTTGAACATCTAGACAAAGTG----
                                                                                                || |   ||| |||||     |||||    |  | | |    | |        || ||||| |||||| || | ||||| ||| |  | || |||||||| |||||||||| ||| ||||||||||| ||||||||||||    
gtgaggaaaaatactaatatattgtttttcctttgtaactattaattacgtacaaaattacatttgtcactgctatttgaagcaaaatgaattgactatggggttgacatttgaagccatctc---acgtttcttcaataatcattcaaatctttgtaatgcagGTTATACTAAAAGATAAGTCGGATATTGATCCCAATGATCAAAGTTCTATTCTTGAACACCTAGACAAAGTGGTAT

upper sequence: Vv19s0014g03680.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT5G54260.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaag--ccattgtcattttgtttcatctt-taaaaatatttctgttgactcacttgatgtttgtgatgcagATTGTGCTAAAGGATGAAGCTGACATTGATCCAAATGATCAAACTTCAATTCTTGAACATCTAGACAAAGTG
||||     | | |   ||  | |  | |  |      |    | ||  || || | || ||     ||||||||||  |||||||||||  ||| |||||||| ||||||||||  |||||||| |||||  | || ||||||
gtaaagtttacttttccttaatatgttatggtggtggcagacttctttgcttacat-attttcaaagtgcagATTGTTTTAAAGGATGAAAGTGATATTGATCCCAATGATCAAAACTCAATTCTGGAACACTTGGATAAAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtttcatctttaaaaatatttctgttgactcacttgatgtttgtgatgcagATTGTGCTAAAGGATGAAGCTGACATTGATCCAAATGATCAAACTTCAATTCTTGAACATCTAGACAAAGTG
     tttcatctttaaaaat  TA-rich tract