Sequence
atgc intronic sequence ATGC exonic sequence...acatattctatttgtttcttaacttacacgtagtggaaattttcttattatttatgaattgtctttttacaggttgaatcttgatattctcttattccagGTGCCATTTACCCACTCTGTATATTGGGATGGAATACATGCGAACCCATAGCTTTAAGCTCGCTGAGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g01170.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA06G32850.1 (Glycine max), 3'ss of exon 10
acatattctatttgtttcttaacttacacgtagtggaaattttcttattatt-tatgaattgtctttttacaggttgaatcttgatattctcttattccagGTGCCATTTACCCACTCTGTATATTGGGATGGAATACATGCGAACCCATAGCTTTAAGCTCGCTGAGCAG
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-tgtgtcactttggtttgtttaacaacttttttgtcaaatcctcttatttttctataaattgctcttttacagtgtaaatcttgatgttcttttattccagGTGCCATTTAGCAACTCTTTACATTGGAATGGAATGCATGCGGACCCACAGTTATAAGCTTGCTGAGCAG
upper sequence: Vv19s0014g01170.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA12G25700.1 (Glycine max), 3'ss of exon 10
-acatattctatttgtttcttaacttacacgtagtggaaattttcttattatttatgaattgtctttttacaggttgaatcttgatattctcttattccagGTGCCATTTACCCACTCTGTATATTGGGATGGAATACATGCGAACCCATAGCTTTAAGCTCGCTGAGCAG
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tatttgtcactttggtttgcttaacaacattgtatg-aaatcctcttattttctataaattatggttttacaggataaatgttgatgttcttttattccagGTGCCATTTAGCAACTCTTTACATTGGAATGGAATGCATGCGGACCCACAGTTATAAGCTTGCTGAGCAG
upper sequence: Vv19s0014g01170.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT1G78770.1 (Arabidopsis thaliana), 3'ss of exon 10
---------------------------------------------------------acatattctatttgtttcttaacttaca-cgtagtggaaattttcttattat-ttatgaattgtctttttacaggttgaatcttgatattctcttattccagGTGCCATTTACCCACTCTGTATATTGGGATGGAATACATGCGAACCCATAGCTTTAAGCTCGCTGAGCAG
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gtaatcaagttactcttgttttcttcaaaactagtgactgtaaatctgtaacttgtgactaaaatgaatcatccttagccctgaagcattgtagaagtcttcttattacgttacaaattgt-tttttacaggttgaatcttgatattattttgttccagGTGTCATTTGCCAACTCTGTACATTGGAATGGAGTATATGCGAACTCACAGCTACAAGCTTGCGGACCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattatttatgaattgtctttttacaggttgaatcttgatattctcttattccagGTGCCATTTACCCACTCTGTATATTGGGATGGAATACATGCGAACCCATAGCTTTAAGCTCGCTGAGCAG
tcttgat putative branch site (score: 4)
tattctcttattcc CT-rich tract
tttatgaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acatattctatttgtttcttaacttacacgtagtggaaattttcttattatttatgaattgtctttttacaggttgaatcttgatattctcttattccagGTGCCATTTACCCACTCTGTATATTGGGATGGAATACATGCGAACCCATAGCTTTAAGCTCGCTGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - -agtggaaa