1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gatgctttacactgctgatgataaggccatggaagtggcatcagaatcatacacttgtattcttattttgtactgaagaagtatctctttaacttggcagGTTGTTGCATCCTTCAGGTTTATTTGAAGAAAAATTTGCATGTTCAGGATATAAACTGAGGCTGAAGATTACTGGTTCAGCAACTCTGTGGATTTCACAA
species | Vitis vinifera |
transcript | Vv18s0122g00680.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAG GTTGTTGCATCCTTCAGGTTTATTTGAAGAAAAATTTGCATGTTCAGGATAEST: gi|351012854|gb|FQ430417.1|FQ430417
genomic: TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAGgtgagctaat ... aacttggcagGTTGTTGCATCCTTCAGGTTTATTTGAAGAAAAATTTGCATGTTCAGGATA
EST: TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAA GTTGTTGCATCCTTTAGGTTTATTTGAEST: gi|351028617|gb|FQ446290.1|FQ446290
genomic: TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAGgtgagctaat ... aacttggcagGTTGTTGCATCCTTCAGGTTTATTTGA
EST: TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAG GTTGTTGCATCCTTCAGGTTTATTTGAAGAAAA-TTTGCATGTTCAGGATAEST: gi|349827467|gb|FQ422335.1|FQ422335
genomic: TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAGgtgagctaat ... aacttggcagGTTGTTGCATCCTTCAGGTTTATTTGAAGAAAAATTTGCATGTTCAGGATA
EST: TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAG GTTGTTGCATCCTTTAGGTTTATTTGAAGAAAAATTTGCAAGTTCAGGATAEST: gi|351029607|gb|FQ427447.1|FQ427447
genomic: TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAGgtgagctaat ... aacttggcagGTTGTTGCATCCTTCAGGTTTATTTGAAGAAAAATTTGCATGTTCAGGATA
EST: TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAG GTTGTTGCATCCTTTAGGTTTATTTGAAGAAAAAATTGCAAGTTCAGGATAEST: gi|351030175|gb|FQ432113.1|FQ432113
genomic: TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAGgtgagctaat ... aacttggcagGTTGTTGCATCCTTCAGGTTTATTTGAAGAAAAATTTGCATGTTCAGGATA
EST: TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAG GTTGTTGCATCCTTTAGGTTTATTTGAAGAAAAATTTGCAAGTTCAGGATAEST: gi|349832962|gb|FQ423084.1|FQ423084
genomic: TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAGgtgagctaat ... aacttggcagGTTGTTGCATCCTTCAGGTTTATTTGAAGAAAAATTTGCATGTTCAGGATA
EST: TATTTGGAAGAAGAATCAGAAAA-TTCAGTTCTAAAATTGAGAAG GTTGTTGCATCCTTTAGGTTAATTTGEST: gi|349826098|gb|FQ415903.1|FQ415903
genomic: TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAGgtgagctaat ... aacttggcagGTTGTTGCATCCTTCAGGTTTATTTG
EST: TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAG GTTGTTGCATCCTTCAGGTTTATTTGAAGAAAAATTTGCATGTTCAGGATAEST: gi|110415179|gb|EC981058.1|EC981058
genomic: TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAGgtgagctaat ... aacttggcagGTTGTTGCATCCTTCAGGTTTATTTGAAGAAAAATTTGCATGTTCAGGATA
EST: TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAG GTTGTTGCATCCTTTAGGTTTATTTGAAGAAAAATTTGCAAGTTCAGGATA
genomic: TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAGgtgagctaat ... aacttggcagGTTGTTGCATCCTTCAGGTTTATTTGAAGAAAAATTTGCATGTTCAGGATA
atcatacacttgtattcttattttgtactgaagaagtatctctttaacttggcagGTTGTTGCATCCTTCAGGTTTATTTGAAGAAAAATTTGCATGTTCAGGATATAAACTGAGGCTGAAGATTACTGGTTCAGCAACTCTGTGGATTTCACAA
ctttaac putative branch site (score: 3)
tctcttta CT-rich tract
ttgtattcttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgctttacactgctgatgataaggccatggaagtggcatcagaatcatacacttgtattcttattttgtactgaagaagtatctctttaacttggcagGTTGTTGCATCCTTCAGGTTTATTTGAAGAAAAATTTGCATGTTCAGGATATAAACTGAGGCTGAAGATTACTGGTTCAGCAACTCTGTGGATTTCACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - actgctg
- - - - - - - - - - - - - ccatgga
- - - - - - - - - - - - - - - - - - ggcatca
- - - - - - - - - - - - - - - - - - - - - - - -catacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaag