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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatttgatgttgagttgttaacacatctaatctgatgtattctttacagagggcttgacaattctattttatgtcacagGTTTCATAAGCCAAGGAAACGAATTTTCATATTACATGATGATATGCTCAAGTTTTATTCTCAATAA

Basic information

species Vitis vinifera
transcript Vv18s0041g00100.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0041g00100.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os05g43560.1 (Oryza sativa), 3'ss of exon 10
------gtatgtatttgatgttgagttgttaacacatctaatctgatgtattctttacagagggcttgacaattctattttatgtcacagGTTTCATAAGCCAAGGAAACGAATTTTCATATTACATGATGATATGCTCAAGTTTTATTCTCAATAA
      | |   |        | | |||| ||   | || || | || ||||||| | |     | |     || ||  |  ||  ||||||||  | ||||| |||||||| || || |||||||||||||| || |||||||| ||||| ||  |
gtaaaagaaaaaaagctcaaataaattgtgaatg-agctgatatcatatattcttgaaaattacccttg---ttttaactcttga-acagGTTTTGTGAGCCAGGGAAACGAGTTCTCGTATTACATGATGATTTGTTCAAGTTTCATTCTAAACCA

upper sequence: Vv18s0041g00100.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G10730.1 (Glycine max), 3'ss of exon 12
gtatgtatttgatgttgagttgttaacacatctaatctg-atgtattctttacagagggcttgacaattctattttatgtcacagGTTTCATAAGCCAAGGAAACGAATTTTCATATTACATGATGATATGCTCAAGTTTTATTCTCAATAA
   ||  | | |  || |   | | ||| | ||| | || ||    |  ||  |       ||| |  || || |||||   |||| || || || || ||||| ||||||||||| |||||||||||||||||||| |||||||| ||  |
--gtgcttataa-attaacaggcttacatagctattatgtatagtatacttctattataactgatacatc-atattatgatgcagGATTTATCAGTCAGGGAAATGAATTTTCATACTACATGATGATATGCTCAAGCTTTATTCTTAACCA

upper sequence: Vv18s0041g00100.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA20G16030.1 (Glycine max), 3'ss of exon 10
gtatgtatttgatgttgag-ttgttaacacatctaatctgatgtattctttacagagggcttgacaattctattttatgtcacagGTTTCATAAGCCAAGGAAACGAATTTTCATATTACATGATGATATGCTCAAGTTTTATTCTCAATAA
|| |||||    |    || ||    |   ||    | |  | || |  |   | |    ||||||  ||    |||||   |||| || || || || ||||| ||||||||||| ||||||||||||||||| || |||||||| ||  |
gtgtgtatacattaacaagcttacataggaattatgtttagtatacttctattataa---ttgacatatca---ttatgatgcagGATTTATCAGTCAGGGAAATGAATTTTCATACTACATGATGATATGCTCGAGCTTTATTCTTAACCA

upper sequence: Vv18s0041g00100.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: PP1S98_148V6.1 (Physcomitrella patens), 3'ss of exon 10
----------------------------------------------------------------------------gtatgtatttgatgttgagttgttaacacatctaatctgatgtattctttacagagggcttgacaattctattttatgtcacagGTTTCATAAGCCAAGGAAACGAATTTTCATATTACATGATGATATGCTCAAGTTTTATTCTCAATAA
                                                                             | || |||  ||| |   || |   ||  | || | |  | ||   ||| ||       |    ||    || | |   |||||||| ||    ||||||||||| || |||||||||||| | |||||||| || |||||||| ||  |
gtatgttatttcactattgcttcattttcattttggttcagataagtagctggggggctcatagcaagattgaattatttgcatt-aatgctttctt-tcctcaattttactttcctctaaaattttcattatctatatgtatctgcttctttaatacagGTTTTATCGCTCAAGGAAACGAGTTCTCATATTACATGCTTATATGCTCCAGCTTTATTCTAAACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctaatctgatgtattctttacagagggcttgacaattctattttatgtcacagGTTTCATAAGCCAAGGAAACGAATTTTCATATTACATGATGATATGCTCAAGTTTTATTCTCAATAA
                                     ttctatttt  CT-rich tract
                                 acaattctattttat  TA-rich tract