Sequence
atgc intronic sequence ATGC exonic sequence...gggaagaacttaggaattagtttgcaaatatgcatggtttatatgaataaattctgggatacaatctcttcctaaatgtggtagctgacactcttgacagGTTAAAGAAAAACGGGCAGAACTTGAAAAACTAAAAACTACATTTGTTAGGAGAGCATCTGAATTCTTAAGAAACTACTTCGCCAGTTTGGTGGATTTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA14G08520.1 (Glycine max), 3'ss of exon 3
gggaagaacttaggaattagtttgcaaatatgcatggtttat-atgaataaattctgggatacaatctcttcctaaatgtggtagctgacactcttgacagGTTAAAGAAAAACGGGCAGAACTTGAAAAACTAAAAACTACATTTGTTAGGAGAGCATCTGAATTCTTAAGAAACTACTTCGCCAGTTTGGTGGATTTTA
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-cacaaagccaagtgaaagtattctggctttggttgatatgtcaaaaatgtgttggacctaaaaattttgttccgatggcggttcctgctacctgttacagGTTAAAGAGAAGCGTGCAGAACTTGAAAAATTAAAATCTACTTTTGTCAGGAGAGCCTCTGAATTCTTGAGAAATTATTTTGCTAGTTTGGTGGACCTCA
upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA09G18840.1 (Glycine max), 3'ss of exon 10
gggaagaacttaggaattagtttgcaaatatgcatggtttatatgaataaattctgggatacaatctct---tcctaaatgtggtagctgacactcttgacagGTTAAAGAAAAACGGGCAGAACTTGAAAAACTAAAAACTACATTTGTTAGGAGAGCATCTGAATTCTTAAGAAACTACTTCGCCAGTTTGGTGGATTTTA
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---caaagccaagtgaaagtattctggctttggttgatatgtcaaaaatgtgttggacataaaaattatctgttccgatggcggttcctgctacctgttacagGTTAAAGAGAAGCGTGCAGAACTTGAAAAATTAAAATCTACTTTTGTCAGGAGAGCCTCTGAATTCTTGAGAAATTATTTTGCTAGTTTGGTGGACTTCA
upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA17G36540.1 (Glycine max), 3'ss of exon 10
gggaagaacttaggaattagtttgcaaatatgcatggtttatatgaataaattctggg----atacaatctcttcctaaatgtggtagctgacactcttgacagGTTAAAGAAAAACGGGCAGAACTTGAAAAACTAAAAACTACATTTGTTAGGAGAGCATCTGAATTCTTAAGAAACTACTTCGCCAGTTTGGTGGATTTTA
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--acaaagccaagtgaaagtattctggctttggttgatatgt-caaaaatgtgttggacctaaaatgatctgttccgatg-gtggttcctgctacccgttacagGTTAAAGAGAAGCGTGCAGAACTTGAAAAATTAAAATCTACTTTTGTCAGGAGAGCCTCTGAATTCTTGAGAAATTATTTTGCTAGTTTGGTGGACTTCA
upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT1G47550.2 (Arabidopsis thaliana), 3'ss of exon 10
-------------------------------------------------------------------gggaagaacttagga-attag--tttgcaaatatgcatgg---tttata-----tgaataaattctgggatacaatctcttccta-aatgtggtagctgacactcttgacagGTTAAAGAAAAACGGGCAGAACTTGAAAAACTAAAAACTACATTTGTTAGGAGAGCATCTGAATTCTTAAGAAACTACTTCGCCAGTTTGGTGGATTTTA
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gtatgcctaatcacttagatctttctaattcgctatctctagttattattctagttttatagtacatcggcctggcttattacattacgttttgtgaatagaaaaaaacatttataattgtctgatacattcatttaaaatgtctttttttgtaatactcttgctg-tattttcttcagGTAAAAGAGAAACGAGCAGAACTAGAAAAATTAAAAGCTACTTTTGTAAGGAGAGCTTCGGAGTTCTTGAGAAACTACTTTGCTAGTTTGGTAGATTTCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30130173|gb|CB915512.1|CB915512EST: CTAACTTGGATCCTGCCTATGCAAACATACGAGCT GTTAAAGAAAAACGGGCAGAACTTGAAAAACTAAAAACTACATTTGTTAGG
genomic: CTAACTTGGATCCTGCCTATGCAAACATACGAGCTgtatgcattc ... ctcttgacagGTTAAAGAAAAACGGGCAGAACTTGAAAAACTAAAAACTACATTTGTTAGG
EST:
gi|30305614|gb|CB982408.1|CB982408EST: GTGGTCTTGAAGTACCTAACTTGGATCCTGCCTATGCAAACATACGAGCT GTTAAAGAAAAACGGGCAGAACTTGAAAAACTAAAAACTACATTTGTTAGG
genomic: GTGGTCTTGAAGTACCTAACTTGGATCCTGCCTATGCAAACATACGAGCTgtatgcattc ... ctcttgacagGTTAAAGAAAAACGGGCAGAACTTGAAAAACTAAAAACTACATTTGTTAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aataaattctgggatacaatctcttcctaaatgtggtagctgacactcttgacagGTTAAAGAAAAACGGGCAGAACTTGAAAAACTAAAAACTACATTTGTTAGGAGAGCATCTGAATTCTTAAGAAACTACTTCGCCAGTTTGGTGGATTTTA
cactctt CT-rich tract
atacaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gggaagaacttaggaattagtttgcaaatatgcatggtttatatgaataaattctgggatacaatctcttcctaaatgtggtagctgacactcttgacagGTTAAAGAAAAACGGGCAGAACTTGAAAAACTAAAAACTACATTTGTTAGGAGAGCATCTGAATTCTTAAGAAACTACTTCGCCAGTTTGGTGGATTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
-ggaagaa
- - - - - - - - - - - - caaatat
- - - - - - - - - - - - - - - -gcatggt
- - - - - - - - - - - - - - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatacaa