1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cgtatctgattttttgaccatcctaagccaacccatccctaatgttgttaatgggtaggttcctcctcctaacatctattttctctatctgctattgcagATTGTGAGTGGAAGGCCCAGGCAGGGAATGTCTGTATTGCATCATTTGACTGGAGCTGCAGTGGAATTTGCAACTCAGTAGAGAAAATCAAAGACGTTCA
species | Vitis vinifera |
transcript | Vv18s0001g04150.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGAAGTTGAGCACATTGATGAACGCAATATGTGCTGTGGGACTCCACCAG ATTGTGAGTGGAAGGCCCAGGCAGGGAATGTCTGTATTGCATCATTTGACTEST: gi|111125070|gb|EE253689.1|EE253689
genomic: TGAAGTTGAGCACATTGATGAACGCAATATGTGCTGTGGGACTCCACCAGgtaatgtttt ... gctattgcagATTGTGAGTGGAAGGCCCAGGCAGGGAATGTCTGTATTGCATCATTTGACT
EST: TGAAGTTGAGCACATTGATGAACGCAATATGTGCTGTGGGACTCCACCAG ATTGTGAGTGGAAGGCCCAGGCAGGGAATGTCTGTATTGCATCATTTGACT
genomic: TGAAGTTGAGCACATTGATGAACGCAATATGTGCTGTGGGACTCCACCAGgtaatgtttt ... gctattgcagATTGTGAGTGGAAGGCCCAGGCAGGGAATGTCTGTATTGCATCATTTGACT
tgttaatgggtaggttcctcctcctaacatctattttctctatctgctattgcagATTGTGAGTGGAAGGCCCAGGCAGGGAATGTCTGTATTGCATCATTTGACTGGAGCTGCAGTGGAATTTGCAACTCAGTAGAGAAAATCAAAGACGTTCA
tcctaac putative branch site (score: 1)
ttttctctatctgct putative PPT
atctatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtatctgattttttgaccatcctaagccaacccatccctaatgttgttaatgggtaggttcctcctcctaacatctattttctctatctgctattgcagATTGTGAGTGGAAGGCCCAGGCAGGGAATGTCTGTATTGCATCATTTGACTGGAGCTGCAGTGGAATTTGCAACTCAGTAGAGAAAATCAAAGACGTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - -ccatcct
- - - - - - - - - - - - aagccaa
- - - - - - - - - - - - - - - - ccatccc
- - - - - - - - - - - - - - - - - - - - - - - - - - gggtagg