Sequence
atgc intronic sequence ATGC exonic sequence...aattatgcggtaccatgagattgggtatatcagctgttgcattagtgttgtttctgagatgagctaggttttctaaatggttagttccattgactggcagTTATTTCACTCCTGATACATATGCTAATGAGCATTCAGCACTTGCTGCTCGGCTTGCAGCTGGTTTATGTGCTGATCTTGCTTCTGCAATTTTTTCTGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g04120.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G107309_T07 (Zea mays), 3'ss of exon 7
----------------------------------------------------------aattatgcggtaccatgagattgggtatatcagctgttg-cattagtgttgttt-ctgagatgagctaggttttct-------aaatggttagtt--ccattgac-----tggcagTTATTTCACTCCTGATACATATGCTAATGAGCATTCAGCACTTGCTGCTCGGCTTGCAGCTGGTTTATGTGCTGATCTTGCTTCTGCAATTTTTTCTGGA
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gtactgcttgatttttttgaaatatttccttcttgttcaagaccttttttttgctttcaaatgtcatgatctgttagtttgtcgctaactgttctggtcattattaatgaatgcttagcctatcttggcatttttgtgcgaaaatcattctttggctaataacacaatttgcagTTACTTCACTTCGGATACTTACGCAAATGGACATTCAGCATGTGCTGCCAAACTTGCAGCTGGATTATGTGCTGATCTTGCTAGTTTGATAGTATCTGGG
upper sequence: Vv17s0000g04120.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA05G07990.1 (Glycine max), 3'ss of exon 9
aattatgcggtaccatgagattgggta-tatcagctgttgcattagtgttgtttctgagatga-gctaggttttctaaatggttagttccattg-actggcagTTATTTCACTCCTGATACATATGCTAATGAGCATTCAGCACTTGCTGCTCGGCTTGCAGCTGGTTTATGTGCTGATCTTGCTTCTGCAATTTTTTCTGGA
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---tattcaattccattcaatgctttagtgttaggatgcttaatgctttttgctttatgttgacaggatgtattcattatgattaatgtctctgtgattgcagTTATTTCACGTCTGATACATATGCCAATGAGCATTCAGCACTTGCTGCTAGGTTGGCAGCTGGGTTATGTGCTGATCTAGCATCAGCAATTGTTTCTGGG
upper sequence: Vv17s0000g04120.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA17G13000.1 (Glycine max), 3'ss of exon 6
aattatgcggtaccatgaga---ttgggta-tatcagctgttgcattagtgttgtttctgagatgagctaggttttctaaatggttagttccattgactggcagTTATTTCACTCCTGATACATATGCTAATGAGCATTCAGCACTTGCTGCTCGGCTTGCAGCTGGTTTATGTGCTGATCTTGCTTCTGCAATTTTTTCTGGA
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aactataatgtatctttagtacctctggtacttttatctaataaaa-actactttcgctgtccaaaaaaaaaaattatgattaat--gtctctgtgattg-cagTTATTTCACTTCTGACACATATGCCAATGAGCATTCAGCACTTGCTGCTAGGTTGGCAGCTGGGTTATGTGCTGATCTAGCATCAGCAATTGTTTCTGAG
upper sequence: Vv17s0000g04120.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT3G18520.1 (Arabidopsis thaliana), 3'ss of exon 8
------------------------------------------------------------aattatgcggtaccatgagattgggt--atatcagctgttgcattagtgttgtttctgagatgagctaggttttctaaatggttagtt--ccattgactggcagTTATTTCACTCCTGATACATATGCTAATGAGCATTCAGCACTTGCTGCTCGGCTTGCAGCTGGTTTATGTGCTGATCTTGCTTCTGCAATTTTTTCTGGA
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gtttgaattttaaaccatttgttacttttttttttgcgttcaccgtgcatatccttgcttgttaatctgactgttcaaacttgaattgaaatttcctttaccttcgctgctcctcatttatctctttttgctcttgatcccgttcttttaccattgtctggcagCTACTTCACCTCTGACACATATGCTAATGAGTATTCAGCACGTGCTGCTAGACTTGCAGCAGGTTTGTGCGCTGATCTAGCTACAGATATTTTCACTGGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37184636|gb|CF603990.1|CF603990EST: TCTTTGGAGCATGTTGAAACTGTAGAACTTACAAGCCGTATTCTTTCGAG TTATTTCACTCCTGATACATATGCTAATGAGCATTCAGCACTTGCTGCTCG
genomic: TCTTTGGAGCATGTTGAAACTGTAGAACTTACAAGCCGTATTCTTTCGAGgtgtgttaag ... tgactggcagTTATTTCACTCCTGATACATATGCTAATGAGCATTCAGCACTTGCTGCTCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttgtttctgagatgagctaggttttctaaatggttagttccattgactggcagTTATTTCACTCCTGATACATATGCTAATGAGCATTCAGCACTTGCTGCTCGGCTTGCAGCTGGTTTATGTGCTGATCTTGCTTCTGCAATTTTTTCTGGA
ttccatt CT-rich tract
ttttctaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aattatgcggtaccatgagattgggtatatcagctgttgcattagtgttgtttctgagatgagctaggttttctaaatggttagttccattgactggcagTTATTTCACTCCTGATACATATGCTAATGAGCATTCAGCACTTGCTGCTCGGCTTGCAGCTGGTTTATGTGCTGATCTTGCTTCTGCAATTTTTTCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - -catgaga
- - - - - - - - - - - - - - - - - tgttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttag